Gene Information

Name : Cpha266_2345 (Cpha266_2345)
Accession : YP_912757.1
Strain : Chlorobium phaeobacteroides DSM 266
Genome accession: NC_008639
Putative virulence/resistance : Virulence
Product : ABC-2 type transporter
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1682
EC number : -
Position : 2720777 - 2721559 bp
Length : 783 bp
Strand : -
Note : PFAM: ABC-2 type transporter; KEGG: bpm:BURPS1710b_3299 capsule polysaccharide export inner-membrane protein

DNA sequence : 
ATGAAAGAGCTTTTACAATCGCTTGCGTTACAGAAGAGAGTGATCGGCGCGCTGCTGATGCGCGAAACCATTACCCGGTA
CGGCAGGAATAACATCGGCTTTCTCTGGCTTTTTATCGAACCGGCACTTTTTACTGTCATGATTACGATCGTCTGGCACT
TCACGAGAGCAGGACGTGTTACCGGCATTCCCATTACAGCTATGGCCGTCACCGGATATGCCTCGATACAGCTCTGGCGA
AATATTGTCAACAGGGCCAAAAACGCTGTGTCGGCAAATAATGCGATCATGTACCATAGAAACATCCATGTGCTCGATGT
TTTTATATCGCGCATTGTGCTTGAAATGTTCGGCTCCATAACCTCATTCATTGCGCTCAGTATCATATTCATCAATATCG
GATGGATGGATCTTCCTCAAGATCCACTCAAGATTATACTTGCCTTGTTGCTTTTATCATGGTTCGGCGCTTCGCTTGCC
CTTATTATCGGTTCGCTCAACACACGTTTTGAAGTAACCGACAGGATATGGAAACCGCTGTCGTATGGCCTGTTTCTTCT
TTCCGGCCTGTTCTTTATTGTGGACTGGCTCTCCCCTGATGCTCAGCGTATTGTTCTTCTTTTTCCGATGGCGCATGGTC
TCGAATTGTTGCGAGACGGGTATTTCGGCAGTATGTTTACCGCACATTACGATATGGCATACATGGCTCTCTGCTGTCTG
GGTCTTACGCTGTCCGGGCTGTTTCTTGTCGATGGCCTGAGCCGGAGGGTCGAGCCCGAATGA

Protein sequence : 
MKELLQSLALQKRVIGALLMRETITRYGRNNIGFLWLFIEPALFTVMITIVWHFTRAGRVTGIPITAMAVTGYASIQLWR
NIVNRAKNAVSANNAIMYHRNIHVLDVFISRIVLEMFGSITSFIALSIIFINIGWMDLPQDPLKIILALLLLSWFGASLA
LIIGSLNTRFEVTDRIWKPLSYGLFLLSGLFFIVDWLSPDAQRIVLLFPMAHGLELLRDGYFGSMFTAHYDMAYMALCCL
GLTLSGLFLVDGLSRRVEPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrC NP_273137.1 capsule polysaccharide export inner-membrane protein Not tested IHT-A Protein 4e-43 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cpha266_2345 YP_912757.1 ABC-2 type transporter VFG2564 Protein 1e-54 54
Cpha266_2345 YP_912757.1 ABC-2 type transporter VFG0257 Protein 2e-43 47
Cpha266_2345 YP_912757.1 ABC-2 type transporter VFG0697 Protein 6e-38 44
Cpha266_2345 YP_912757.1 ABC-2 type transporter VFG0685 Protein 6e-38 44