Gene Information

Name : Cpha266_2344 (Cpha266_2344)
Accession : YP_912756.1
Strain : Chlorobium phaeobacteroides DSM 266
Genome accession: NC_008639
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 2720127 - 2720780 bp
Length : 654 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nma:NMA0195 capsule polysaccharide export transport system ATP-binding protein

DNA sequence : 
ATGATCGTTGTCAATAATATTGTCAAACGTTATAAAACAAGGACCGGCTACAACACCGTACTCGATGGCATTTCGTTTTC
CGTTGAGAAAGGCGAGAAAATAGGAATACTTGGCAGAAACGGAGCAGGGAAGTCAACGTTGATCCGTCTTCTGGGCGGTA
TCGAACATCCGGATTCCGGAACGATCGAACGCCGCATGAACGTTTCCTGGCCTCTGGCTGCAAAAGGCGGATTTCAGGGA
TCGTTGACAGGCGCAGACAACCTTCGCTTCATTTGCCGGATTTATGGTGTCGATTATGCTGATAAAATGAAGTTTGTCGA
AGAGTTTGCAGAGCTTGGCCAATATATGCACGAGCCATTGAAAACATACTCGGCCGGCATGCGGGGTCGTTTGGCATTCG
CTCTTTCCATGGCCATAGAATTCGACTGTTATCTTATCGACGAAGCCATGTCAGCCGGAGATGCCCGCTTCCGTGATAAA
TGTCGTTATGAACTGCTTGAAAAACGGGGTGACCGGTCGATCATTCTTGTATCGCACGAACCAAAACAGATGCGTCAATT
CTGCACGGTCTTTTATGTGCTTCTGGACGGCAAGATAATTCGTTTCGACGACGGTGATAAAGCATACGGGTTTTATAAAA
AAAATTTCAACTGA

Protein sequence : 
MIVVNNIVKRYKTRTGYNTVLDGISFSVEKGEKIGILGRNGAGKSTLIRLLGGIEHPDSGTIERRMNVSWPLAAKGGFQG
SLTGADNLRFICRIYGVDYADKMKFVEEFAELGQYMHEPLKTYSAGMRGRLAFALSMAIEFDCYLIDEAMSAGDARFRDK
CRYELLEKRGDRSIILVSHEPKQMRQFCTVFYVLLDGKIIRFDDGDKAYGFYKKNFN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 2e-66 65
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 3e-46 46
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 7e-44 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cpha266_2344 YP_912756.1 ABC transporter VFG0258 Protein 7e-67 65
Cpha266_2344 YP_912756.1 ABC transporter VFG0696 Protein 1e-66 62
Cpha266_2344 YP_912756.1 ABC transporter VFG2563 Protein 1e-58 58
Cpha266_2344 YP_912756.1 ABC transporter VFG1449 Protein 2e-44 45