Gene Information

Name : Cpha266_1627 (Cpha266_1627)
Accession : YP_912072.1
Strain : Chlorobium phaeobacteroides DSM 266
Genome accession: NC_008639
Putative virulence/resistance : Unknown
Product : phage integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1848779 - 1850038 bp
Length : 1260 bp
Strand : -
Note : PFAM: phage integrase family protein; KEGG: sat:SYN_01916 DNA integration/recombination/inversion protein

DNA sequence : 
ATGCCAAAACGAATTCTCCCTCTTTCCGATGCTCAGGTGAGCAAGGCCAAGCCGGCTGAAAAGGATTATAAGCTTTCGGA
TGGTGGTGGCTTGCATCTTCTTGTTACTACCAGCGGTGGTAAGCTTTGGCGTTTTCAGTATCGTTTCGACGGTAAACAGA
AGCTGCTCGCTTTGGGGCAATACCCTGAAATCTCCCTTGCTAATGCCCGGAAGCGGCGGGAGGAGGCTCGAACCCTTCTT
GCAAATGAACAGGATCCCAGCGAGGCAAAAAAGGCTGCAAAAAAGGCTGAGGCATTGAAGGATGCTTCGTCTTTTGAGCT
TGTGGCCCGGGAGTGGTTCGGCAAGAATGATCCGGTATGGTCGCCGGGACATGCTTTGACGGTGATGTGCCGGCTTGAGA
AGGATGTGTTTCCGGCTATCGGCAGCAAACCGGTTTCTGAAATTACGGCTTCGGATATCCGGACAATGTTACTGAAGATC
GAGGCCAGGGGGGCGGTGGAAACGGCTACAAGAATCAAGATCATGTGTGGACAGGTGTTCAGGTATGCTGTGGCAACCGG
AAGGCTTGAGCATGATCCTTCGGCGGCTTTGAAGTCGCGTGAGATTTTCCGGAAACGTGAAATACGACACCATGCCGCCA
TTACGGATCCGAAAGAATTGGCTCCCTTGCTGATGGCGATTGATGAGTATCAGGGAACCTTTGTGGTGAAATCGGCTTTG
CAGCTTACTCCTTTGCTTTTTGTCCGGCCCGGTGAGCTTCAGAATATGGAGTGGTCAGATATTGATTTCGAGGAGGCGTT
GTGGTCAATTCCGGCGGAACGCATGAAGATGCGGCAGCCGCACCTTGTTCCGCTTTCCCGGCAGTCATTGAGTATTTTGC
AGGGGTTACATCCTGCAACCGGACATGGAAGATATGTGTTTACCGGACGTGGTAGCCGACCAATGAGTAATAATAGCATT
AATGCAGCCCTTCGATATCTGGGTTATGACAGTGACACGGTTACCGGTCATGGGTTCAGGGCGACAGCCCGCACGATTCT
TGATGAAGTTCTGGGTTTCAGGGTTGATTTGATCGAGCACCAGTTGGCTCATGCGGTCCGGGATCCGAACGGGCGCGCCT
ATAATCGAACCTCTTTTCTTGACGATCGACGGCAGATGATGCAGGCTTGGGCGGATTATCTGTACAGCCTGAAGGCTGGG
GTGAAGATGCCGGCATCGGGAGTTTTACCCCTAACACGGAAAAAAAAGGCGCTTGTATAG

Protein sequence : 
MPKRILPLSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYRFDGKQKLLALGQYPEISLANARKRREEARTLL
ANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDPVWSPGHALTVMCRLEKDVFPAIGSKPVSEITASDIRTMLLKI
EARGAVETATRIKIMCGQVFRYAVATGRLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKSAL
QLTPLLFVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHPATGHGRYVFTGRGSRPMSNNSI
NAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVDLIEHQLAHAVRDPNGRAYNRTSFLDDRRQMMQAWADYLYSLKAG
VKMPASGVLPLTRKKKALV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAD44730.1 Int Not tested SHI-2 Protein 1e-74 45
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-73 44
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-69 44
int CAC39282.1 integrase Not tested LPA Protein 6e-75 44
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-75 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-74 44
int ACU09430.1 integrase Not tested LEE Protein 2e-74 44
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-74 44
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-74 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-73 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-73 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-73 44
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 9e-65 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 9e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cpha266_1627 YP_912072.1 phage integrase family protein VFG0783 Protein 1e-74 44
Cpha266_1627 YP_912072.1 phage integrase family protein VFG0598 Protein 2e-73 44