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Name : lysS (BAD_0376) Accession : YP_909239.1 Strain : Bifidobacterium adolescentis ATCC 15703 Genome accession: NC_008618 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 474277 - 476040 bp Length : 1764 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : TTGGATATATTACACGATTGGGCGCTGTATGCAAGGTCGGCGTGTCGCGTGTTGTGTAGTGGCTTCTCGGTACACTTGGG GCTTATGACTGAGACCAACGAATCCCAAGAGAATCAGAACGAAGAAGAGGCCGCAGTTCCCACCATGACCACGGTGGAAC GCGCCGAAATGCTGCTGCAGCAGGATGCTGCGATTCGCGCCAAGATCAACGGCGGCGCCGCGCTGGACGAGGCCGTGGAC CCGTCCAATAAGGAATTCGGCCCGCTGGCCCACCCGGAACAGGTGCAGATGCGTGTGGCCAAGCGCGCCATGATGCTTAA GGAAGGCATCCAGCCGTACCCGGTGACCCTTGACGTCACCGCCACCATCGAAGAGGTCCGCGCCAAGTATGACGGCAAGC TCGAAGCGGGCGACGAGACCGGGGACGTGGTCGGCATCGCCGGCCGTGTGCTGTTCCTGCGCAACGCGGGCGGCCTATGC TTCGTGCAGCTGTCCGCCGGCGATGGCACCAAAATCCAGGGCATGATCTCCAAGAAGGAGATCGGTGCCGACTCCCTGAA GCAGTTCAAGCAGCTGGTCGATTTGGGCGACCACCTGTTCATCAAGGGCCGCGTGATCGCCTCCAAGACCGGCGAACTGT CCGTATTCGCCACCGAATGGGCCATCGCCGCCAAGGCATTGCAGCCGCTGCCGGCCCTGCACAAGGAGCTCAACGAGGAC ACCCGCACCCGCAAGCCGTACATCGGCATGATCGCGGACGAGAAGATCCGCAACATGGTGCGCAACCGTTCCAAGGCCGT CGCCTCCCTGCGCAAGACCTTCGCCGACCATGACTTCCTCGAGGTCGAAACCCCGATGCTGCAGACCGTGCACGGCGGTG CCGCGGCTCGTCCGTTCACCACGCACATGAACGCCTTCGACCTTGACCTCTACCTGCGCATCGCGCCGGAACTGTTCCTC AAGCGTTGCCTCGTCGGCGGCATCGACCGCGTGTTCGAAATCAACCGCGACTTCCGCAACGAGGGCGTCGACGCCACCCA CGCGCCGGAATTCACCATGGTCGAGGCCTACCAGGCCTACGGCAACTACGACACCATCGGCGCGCTCGTCAAGCAGCTCG TGCAGGACACCGCCATGGACGTGTTCGGCAGCCACAAGGTGACCCTGCTGGACGGCACCGAATACGACTTCGGCGGCGAA TGGAAGACCATCAGCATGTACGACTCCCTCTCCGAGGCCCTGGGCGAGGAAATCGTGCCGAACGGCGGCCCGGACAACCC CGGCACCTCCGTGGAGCACCTGGGCGAGATCGCCGACAAACTCGGCGTGGAACGCGACGACGTGGAGAACCACGGCAAGC TCGTCGAACACCTGTGGGAGCACTTCTACGAGGACAAGCTGTACGAGCCGACCTTCGTGCGCGACTTCCCAGTCGAGACC TCCCCGCTGGTCAAGGGCCACCGCTCCAAGGCCGGCGTGGTCGAGAAGTGGGATCTGTACGTGCGCGGCTTCGAGCTGGC CACCGGCTACTCCGAGCTCAACGACCCGGTCGTGCAGCGTGAACGTTTCGTGGCCCAGGCCAAGGATGCGCTCGCCGGCG ATGAGGAAGCCTGCGACATCGACGAGGACTTCCTGGAGGCCCTCGGCGTGGGCATGCCTCCGGCAGGCGGCATGGGTATG GGCATCGACCGACTGCTCATCGCACTGACCGGCGCCACCATCCGCGAGACCATCACCTTCCCGCTTGTGAAGCCGCTGAA CTGA Protein sequence : MDILHDWALYARSACRVLCSGFSVHLGLMTETNESQENQNEEEAAVPTMTTVERAEMLLQQDAAIRAKINGGAALDEAVD PSNKEFGPLAHPEQVQMRVAKRAMMLKEGIQPYPVTLDVTATIEEVRAKYDGKLEAGDETGDVVGIAGRVLFLRNAGGLC FVQLSAGDGTKIQGMISKKEIGADSLKQFKQLVDLGDHLFIKGRVIASKTGELSVFATEWAIAAKALQPLPALHKELNED TRTRKPYIGMIADEKIRNMVRNRSKAVASLRKTFADHDFLEVETPMLQTVHGGAAARPFTTHMNAFDLDLYLRIAPELFL KRCLVGGIDRVFEINRDFRNEGVDATHAPEFTMVEAYQAYGNYDTIGALVKQLVQDTAMDVFGSHKVTLLDGTEYDFGGE WKTISMYDSLSEALGEEIVPNGGPDNPGTSVEHLGEIADKLGVERDDVENHGKLVEHLWEHFYEDKLYEPTFVRDFPVET SPLVKGHRSKAGVVEKWDLYVRGFELATGYSELNDPVVQRERFVAQAKDALAGDEEACDIDEDFLEALGVGMPPAGGMGM GIDRLLIALTGATIRETITFPLVKPLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-134 | 56 |
