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Name : Rmag_0886 (Rmag_0886) Accession : YP_904072.1 Strain : Candidatus Ruthia magnifica Cm Genome accession: NC_008610 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 947071 - 948969 bp Length : 1899 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cps:CPS_ DNA sequence : ATGAAACTATTTAAGAAATTAACAACATTGCCTAGGACTATTAAGCAATTAATTGTTTTATTGATTGACTCAGTTGTGTT GGTCAGTATATTGCTAGTTTCCTTTTCTCTTAGACTTGGATATTGGTATTGGCCACAAAGCGATCTTTTTTTGGTGATTA TTGGCGCACCAGTGATTGCTATTCCAATTTTTATTCAATTTGGACTTTATCATGGTATTGTTCGGTTTTTAGGGCTTCAG GCATTATGGTCAGTAATTAAGGCCGTATCTCTATATGCACTGATATGGGGCGTAGTTGGCTTTATAACTGCCGTAGAAGG CATTCCAAGATCAGTTATACTTATTAATGGATTACTGGCAATTATGGCAATTGGTGGATTGAGAATGTTGGCTAGATGGG CGCTATCTGATGTGGGTACTTTTCTTAAAAATAGCAAGAAAAATGTTATTATTTATGGTGCTGGAGCGGCTGGAAGGCAG TTATCTGAGGCATTATTACAATCAAAAGAGTATAAGCCTGTTGCCTTTATTGATGATGCTAAGGATTTAAATAAGCAATA TATTAATGGTGTAAAAGTATATGGCACTAAGCATATTGAATTATTGATATACAAATATAGTGTCAATGAAATTTTATTGG CATTGCCTTCAGTGTCACGTCAAAGGCGTAATGAAATTATCAATCTATTAGAATCATATCCAGTTCTTGTACGGATTTTG CCAGGTGTGTCTGCACTTGCGCAAGGTCAAGTTAAAGTTGATGATTTACGTGATGTGAGTATTGGTGAATTGTTGGGTAG AGAGCCTATCAGTCCTAATCAATCTCTACTTGAAGTGAATATCAAAAACAAAGTTGTGATGATAACAGGTGCTGGTGGAT CAATTGGTTCAGAGCTGTGTAGACAGGTTATTAGCCTCGGCGTGTCCAAACTAATATTATTTGAGCAAAGTGAATTGGTA CTTTATACCATTGATAAAGAATTGAGTGATAGCGCCAAGGTATTTCCAATATTAGGTTCTGTGGTTGACCAAGACAGAGT AGAAAGAGTGTGTAAGCAATTTAAAGTGCAGACAGTTTATCATGCTGCGGCTTATAAACATGTGCCTATGGTGGAGTTTA ATCATACTGAAGGCGTAATGAATAACATTTTTGGTACGCTCAATTGTGCACAAGCTGCAATTAATAACAAGGTTGAAACA TTTGTGCTAATATCCACTGATAAAGCCGTACGTCCAACAAATACCATGGGTGCCACTAAACGCTGTGCTGAAATGGTATT GCAAGCATTGTCAAAATGTCAAAGTGATACAAGGTTTAGCATAGTGAGGTTTGGCAATGTGCTAGATTCTAGCGGCTCGG TTATTCCTTTGTTTAAAAAACAAATTAAAGAAGGCGGACCAGTAACGGTGACTGATAAAGAAATTGTTCGTTATTTTATG ACCATATCTGAAGCAGTGGCATTGGTTATTCAAGCAGGTGCTATGGGTTCTGGTGGTGATGTGTTTGTACTTGATATGGG TAAATCCGTTAGAATTTATGATTTGGCTTTAAAGATGATTCATTTAACGGGATTAGAGCTTAAAGATGAAACCAACTTAA ATGGAGATATTGAAATTAAAATCACAGGTCTTCGTCCAGGAGAAAAGCTTTTTGAAGAATTATTAATTGATGACAATGCG TTGAATACTAGTCACTCAATGATTATGAAAGCTCAAGAAAATATGCTCTCTTGGAGAGAGTTAAGATTGTTATTAGATGA TATAAAACTTGCTATTACTAGCCATGATCAAAATAAATTACGTTTATTACTGATACAAATTGTACCAGGTTTTAAGCCAC AGTGCGGTATTAGTGACTTATTATTTAATAACCAATCCTTACCTGTTCTAAAAAAGTAA Protein sequence : MKLFKKLTTLPRTIKQLIVLLIDSVVLVSILLVSFSLRLGYWYWPQSDLFLVIIGAPVIAIPIFIQFGLYHGIVRFLGLQ ALWSVIKAVSLYALIWGVVGFITAVEGIPRSVILINGLLAIMAIGGLRMLARWALSDVGTFLKNSKKNVIIYGAGAAGRQ LSEALLQSKEYKPVAFIDDAKDLNKQYINGVKVYGTKHIELLIYKYSVNEILLALPSVSRQRRNEIINLLESYPVLVRIL PGVSALAQGQVKVDDLRDVSIGELLGREPISPNQSLLEVNIKNKVVMITGAGGSIGSELCRQVISLGVSKLILFEQSELV LYTIDKELSDSAKVFPILGSVVDQDRVERVCKQFKVQTVYHAAAYKHVPMVEFNHTEGVMNNIFGTLNCAQAAINNKVET FVLISTDKAVRPTNTMGATKRCAEMVLQALSKCQSDTRFSIVRFGNVLDSSGSVIPLFKKQIKEGGPVTVTDKEIVRYFM TISEAVALVIQAGAMGSGGDVFVLDMGKSVRIYDLALKMIHLTGLELKDETNLNGDIEIKITGLRPGEKLFEELLIDDNA LNTSHSMIMKAQENMLSWRELRLLLDDIKLAITSHDQNKLRLLLIQIVPGFKPQCGISDLLFNNQSLPVLKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-76 | 45 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 1e-75 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rmag_0886 | YP_904072.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 6e-111 | 45 |
