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Name : smpB (Rmag_0379) Accession : YP_903619.1 Strain : Candidatus Ruthia magnifica Cm Genome accession: NC_008610 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 416752 - 417249 bp Length : 498 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCTAAAAACAATAAAAAAATAAAAACAAGTTTAAACATCATTGCGCTTAATAAAAAGGCAAGACATAACTATTTTAT CGAACAAACCTTAGAAGCTGGTTTAAGTTTAGAGGGTTGGGAAGTAAAAAGCTTGCGAGACTCTAAAGTCCAAATCAAAG AAAGTTATGTTATTTTAAAAAATAACGAACTATTTTTGTTTGGTGCACATATTTCACCACTTAAGAGCGTGTCAACACAT GTTAATTCCGACTCTACTCGTACTCGAAAATTATTACTCAATCGTTTAGAAATTAATCGTATTAAAGACAATATTAACCA AAAAGGAGCCACTATTGTACCACTTAAGCTTTATTGGGCTAGGGGCAAGGTGAAGTTAGAAATTGGCATGGCTAAGGGTA AAAAATCTCATGACAAACGTCAAGACATTAAGTTAAAAGATTGGCAAAGAGACAAGCAAAGAACGCTAAAAGAGACAAAT AAAATTTTTAATTTTTAG Protein sequence : MAKNNKKIKTSLNIIALNKKARHNYFIEQTLEAGLSLEGWEVKSLRDSKVQIKESYVILKNNELFLFGAHISPLKSVSTH VNSDSTRTRKLLLNRLEINRIKDNINQKGATIVPLKLYWARGKVKLEIGMAKGKKSHDKRQDIKLKDWQRDKQRTLKETN KIFNF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 6e-40 | 55 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-24 | 46 |
