|
Name : Rmag_1008 (Rmag_1008) Accession : YP_904185.1 Strain : Candidatus Ruthia magnifica Cm Genome accession: NC_008610 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1074537 - 1075826 bp Length : 1290 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAAGTAAAAAGCAATTAAGATTAAACATAAAGGCTGTTGCTGATGCCCTAAAAAAGAGACACTTTTATTTTGATGT TAACCAATTAATTGAATTAGAAAATAATAGAAAAAAAAATCAAATCGAAACTCAAAACCTGCAAAATGTACGTAATATAC AGTCTAAGGCGATTGGCAAAGCCAAAGTTTCTGGAGAAGATGTCAAACCTTTATTGAAGAATATTGCAGATTTAAGTGAT AAGCTAAATTTAGTAAAATCAAATTTGCAAGTAATTCAGTCTGATATTGATGCGATTGTTTTATTGATGCCAAATATTCC TCATTATTCTGTACCTTGGGGTAAGAGTGAAGAGGATAACGTTGAAGTGTCAAAATGGGGGGAACCAGGTCAGTATGATT TTGATGTAAAAGATCATGTTGATTTGGGTGAAATGTATGGGTTAGATTTTGAGACATCAGTTAAGATCTCTGGTACTAGA TTTTCTGTCATGACTGGGAAAATTGCACGTCTACATCGTGCATTGACACAATTTATGTTGGATCGACATAGCGAAGTAAA TGGTTATACCGAGGCTTATGTGCCTTATTTAGTAAATGCAGAATCTTTAATTGGTACGGGCCAGTTACCAAAGTTTGAAG CTGATTTATTTAAAACGTACCTGCATGGAGAGCAGGGAGAAGCCAAGACATTGTATTTGATTCCAAGCGCTGAAGTGCCT GTAACTAATATGATGCGTAATATGATTGTCAAAGAGAGCGATTTACCGCTTAAGTTTGTGGCGCATACACCTAGTTTTAG ATCAGAGGCAGGTAGTTATGGACGTGATACTCGTGGCCTTATTCGTCAACATCAATTTGAAAAAGTTGAGTTGGTGCAAG TGGTTAAAGCGCAAGACTCGTATCAAGCTTTAGAGGAATTAACTGCGCACGCTGAAGGCATCTTGCAAGCATTAGAATTA CCTTATAGAAAGGTCAATTTATGTACAGGGGATCTTGGTTTTTCTGCCGCTAAAACCTATGATTTAGAAGTGTGGTTACC TGGGCAAAATGCTTATCGTGAAATTTCTTCTTGTTCTTGTTTTGAGAATTTTCAGGCACGACGTTTACAATTGAGATATA AGAATGAAGAAACTAATAAGCCAGAATTATTACATACATTGAACGGTTCAGGTTTGGCGGTTGGTAGAACGTTAGTGGCC GTATTAGAAAACCATCAACAAGCCGATAGAAGTATTAAAATACCCTTTGTTTTACAAAGCTACATGGGTAGTCTAAAAGT TATTAATTAA Protein sequence : MLSKKQLRLNIKAVADALKKRHFYFDVNQLIELENNRKKNQIETQNLQNVRNIQSKAIGKAKVSGEDVKPLLKNIADLSD KLNLVKSNLQVIQSDIDAIVLLMPNIPHYSVPWGKSEEDNVEVSKWGEPGQYDFDVKDHVDLGEMYGLDFETSVKISGTR FSVMTGKIARLHRALTQFMLDRHSEVNGYTEAYVPYLVNAESLIGTGQLPKFEADLFKTYLHGEQGEAKTLYLIPSAEVP VTNMMRNMIVKESDLPLKFVAHTPSFRSEAGSYGRDTRGLIRQHQFEKVELVQVVKAQDSYQALEELTAHAEGILQALEL PYRKVNLCTGDLGFSAAKTYDLEVWLPGQNAYREISSCSCFENFQARRLQLRYKNEETNKPELLHTLNGSGLAVGRTLVA VLENHQQADRSIKIPFVLQSYMGSLKVIN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 7e-92 | 51 |
