Gene Information

Name : Ppro_1179 (Ppro_1179)
Accession : YP_900859.1
Strain : Pelobacter propionicus DSM 2379
Genome accession: NC_008609
Putative virulence/resistance : Virulence
Product : two component sigma54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1231237 - 1232610 bp
Length : 1374 bp
Strand : +
Note : PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gme:Gmet_0812 two component, sigma54 specific, transcriptional regulator, fis family

DNA sequence : 
ATGACGGATGAAACACGCATACTGGTGGTTGACGACGATGATTCGGGACGCGAGGCGCTGGAGCTTTTGCTCAGGTCCGG
CGGCTATACCGTCATGGGTGCCGCCACCGGTGAGGAGGCCCTGGCCGCCCTGGAACGTGAGAGCTTCCACCTGTTGGTGC
TGGACCTGTTCCTACCGGACACGAGCGGTATCGAAATCCTTCAGGTTACGCGCCGCAAGTACCCAACCACGGAGGTGATC
GTGGTGACCGGCTACGCCTCGGCCGAGACCGCGGTGAGCGCCATGAAAGAGGGGGCCTTCGACTATATCACCAAGCCGGT
CAACTTCGAGGAGTTGCGGATCGTCGTCAGGAAGGCCCTGGAGAAGCAGCAGCTGTTGTCGGAGAACGTGTATCTGCGCC
GGCAGTTGGAGGAACGTTTCGAGTTCAGCAACATCATCGGCTCGTCACCGGCAATGAAGATTGTCTTCGAGCGCATGGCG
CGCATCGTGAAGACCGACTCCACGGTGCTGATAACCGGAGAATCCGGGACAGGCAAGGAACTGGTGGCCAGGGCGCTGCA
CTTCAACGGTCCGCGCAAGCAGAAGGCGTTCATCGCCGTCAACTGCAGTGCCATTCCGGAAACGCTGATGGAGAGCGAAC
TGTTCGGCCATGTGCGCGGCTCGTTTACCGGCGCGGTCAAGGACAAACCCGGAAAGTTCGAGGCGGCCAACCACGGCACC
ATCTTCCTGGACGAGATCGGCACCATGCCCCAGCACCTGCAGACAAAGTTGCTGCGGGTGCTCCAGGAGCAGGAACTGCA
GCGGGTCGGCTCCAACAGCTCCATAAAACTGGATGTGCGGGTCATATCGGCCACCAACCTGGACCTGGAGCAGCAGGTGC
GCCAGGGGCTCTTCCGCGATGACCTGTTCTATCGCCTGAACGTGATTCCTCTGCACCTCCCGCCGCTGCGCGAGCGCAAG
CAGGACATCCGGGCGCTGGTGGGGGCGTTTCTGGAGAAGTACTGTCGGCTCATGGGGCGGCCGTTGATGACCATCAGCAG
GAAGGCGCTGGAGGCGCTGGAGCAGCACTCCTGGCCCGGGAACGTGCGTGAACTGGAGAATCTGGTGGAACGTCTGGTGG
CTCTGACTGAAGGTGAGGTGATCCGGCTGGAGGACCTGCCGCCTGGAGTCTGTGGACAGGGGGCGCTGCCGGGTGCATTC
TCCCTGGAGCTGACAGCCAGCGGCATGGATATGGTCGAAACCATCGCGCTGATCGAGCGCAAGTTGATTGGTCAGGCTTT
GGAACTCTCCGGCGGGGTCAAGGCCAAGGCATCGCACTTGTTGGGGATCAACCGGACAACGCTGGTGGAGAAGATGAAAC
GGCTGAAGATGTGA

Protein sequence : 
MTDETRILVVDDDDSGREALELLLRSGGYTVMGAATGEEALAALERESFHLLVLDLFLPDTSGIEILQVTRRKYPTTEVI
VVTGYASAETAVSAMKEGAFDYITKPVNFEELRIVVRKALEKQQLLSENVYLRRQLEERFEFSNIIGSSPAMKIVFERMA
RIVKTDSTVLITGESGTGKELVARALHFNGPRKQKAFIAVNCSAIPETLMESELFGHVRGSFTGAVKDKPGKFEAANHGT
IFLDEIGTMPQHLQTKLLRVLQEQELQRVGSNSSIKLDVRVISATNLDLEQQVRQGLFRDDLFYRLNVIPLHLPPLRERK
QDIRALVGAFLEKYCRLMGRPLMTISRKALEALEQHSWPGNVRELENLVERLVALTEGEVIRLEDLPPGVCGQGALPGAF
SLELTASGMDMVETIALIERKLIGQALELSGGVKAKASHLLGINRTTLVEKMKRLKM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 9e-59 41
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 9e-59 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ppro_1179 YP_900859.1 two component sigma54 specific Fis family transcriptional regulator BAC0089 Protein 1e-82 50
Ppro_1179 YP_900859.1 two component sigma54 specific Fis family transcriptional regulator BAC0467 Protein 2e-73 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ppro_1179 YP_900859.1 two component sigma54 specific Fis family transcriptional regulator VFG1249 Protein 5e-63 45
Ppro_1179 YP_900859.1 two component sigma54 specific Fis family transcriptional regulator VFG0116 Protein 1e-58 43
Ppro_1179 YP_900859.1 two component sigma54 specific Fis family transcriptional regulator VFG1214 Protein 8e-65 41