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Name : pdpC (FTN_1319) Accession : YP_898949.1 Strain : Francisella novicida U112 Genome accession: NC_008601 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 1391204 - 1395181 bp Length : 3978 bp Strand : + Note : - DNA sequence : ATGAACGACAAATATGAACTAAATATCTATTTTGAGAAAATAGAGTTACCTAAAACAGCAGATTTCAATATGATAAGCAA GCATGATATTAAAGAACTCAGAGTAGATGCTAATTTAAAAAAGAAAATACACTTATTACAATTTGATGAAGATTATTTAG CATATATGAGGAGCTTAAGAGCTATTCATCCCTCAAAAATAGCAATGCAAAAAATTAAATCAATTCGCAATAAAGAAGAT TCTTTTATAATAGCCATTTTTTCTTTAGATAAAATAATTCACAAAACTAAATTTATCTCTTTTGGACATAAAACCGTTAT TTTTGATTTTAAAAAACTATGGGGATTAGTTGATTTCGTAATAGTTCATACAAGTAATAAAACCTGGGTTAATCATAAGT TAACATCATTTATGCCATCAATTACATACTGTAATCAAAACATCATCCATTTAGCATACCATTCTGATTTTTTATATATT TATCATACTCCAGAATTTATGGATGATATAAATGTAGATCGAGAAAATAGAAGAGAGTTAGTGGCAAAAATTCCCGATCC ATATTGGGTAAGAGCTGATACTAAAGAAAATAAAATCAATATTAATTCTGAAGAGGAAAATATAGAAAAAGATTTAAAAA AAATAACTAAATTAAAAAATTTTGAAATAAGCGCAAATGATATTTTTTTCTCAAAAGCTATAAAAGCAGCTCCAAGATTA CAACATAAAAATAAGAGTAAATTATTTAATTCATTAGCGATTGAAAATAATGAAAAAATCAAACGTGACATAATTGATTA TGCAATATCTAATGCTTGGTATAAAAACGAGGGGTTACTTGAAAATCTAATGACATTTTTAGACGCGCTAGTCGTAAGAC ATCTCTACTTAATAGCAGTTTACTCAGTTTATGAAATAGAAATAGGTATTAAATCAGTAAAACCTGAGTATAGCAAATTA TTAAAAGCTGGCCTATTGAACAAAGATATTCAAAATCAATTGATATATGATCAAAAGAAAATTAGCAATATTATTTGGCT TGGTGAAACATTTCATGGTTTAGATATTGAAGAAGCAGAAGATTTATGTGAACTTATTGACCAAGGCGATATTAATCCAA AAATTAATCCTATAAATCCTGAAAAGCTATATAGAGCCTATAAAGAAAATTATGGAAATGAAGCGTTAAGCTTTAGAGAA TACAAAGAAAAATATAATTTTTTAGATAATGATAAGCTTAGAGAAGAACATGCAAATAAACTTTCAAGCATATTAGAAGA TCCAAAATTTAGAGTTCTTAGCTATATAAATGCATTTTTATGTTCAACTAAAAATTATCTAGTACCTTATGGGTATTTAG GAAGTAATCCTCTTACATACTATAATTGTATGCTAGAAACCGGAAAACGTAGAACATCAAAAGAAGCATATTTTGCTGAT ATAAGAAACAAATTGTTTATGGTATGCTATCTTCCTGGCTTCTTGAGCTCTGTAATTGCTGATGATGACTTTATAGACTG GTATTCTAATAAGAAAGAAAATCAAGAATTACTCAAAAACTCTTATTTGAACAATTTATATAAGTCAAAGCAGAAATATA TAAAAGATTTTATAGATCTTGATATTATTAAACTTCTAAAACAGACATCATCTCAAATCAAGCCAAGCTATATACCAGTA GCTTTTAGATATGGTGCATTTGCCTCAACAACTGCTTTGATAAGATCAAATGCAAATGTTTCTAATCGAATGGAGTTTGA ATTATATGACTCACCTGAAAGACTACATAATCAATACTCAGAAAAAGAGGAAATGATTATGCCAAAATCGGTTAATAACC CCAAGGATCACTCAATTGACAATGGAATATCTTTATTTAGCCTTAATCTAACAAATGAAAAAGAAGATGGACTTCGAAAA GTTATGTTGAAAGTTGCACAACTATATAATCTTGATTTCAAGGTAGGTATCTCAGGAAATTTAGATCAAGCAATGACTCA GGCATTAATACTTGGGATGGCAACTACAAAAAAAAATGGCGATATCTTACTTGATGAAGATCAAATGCTATATATGACAT ACTTATACTGCATTTTCATGGCACATAGTGTCGATCATACTGTAGATGAAATACTAATGTCTGCAAATACTTATCTGTTA AATTCTGAAGAGGTAAAGTATCCTATATTTAATATAGCTGATTTTTTTGCTAGGCCTGTATTTGGACTCTCTAAGGATAA AGAGTTTAAATCATTAGTTGAAAAGTATGAAAATAGCCTAAAACCTAATTCAAAAATTCTCAAAGAGAATTATATAAGTA GAGTAGTCACACTATCTGAAGTATATGAAGATATATATAACTTAAATTGTTTATATAGTTCTCTCTCAGAAGGATCCTTG TATAATCTACTATCAACTCACAGTGAAAGACACTGTACTTTATTAGAGCAGTATTCTCGCAAGAAGAAAGCTGAGATAGG ATTAGTCCAAGATGGAGAGAAAATAAAAGTCGTAAACAACTACAGTGGCTATGCTGCGATTAATCAATATCAACGTTTTG TATCACTAGGCAGAATGTATGATAGTGGTGCAAAATACTCCTCTTCTCATAAAAAACAGATAGAAAAAGATTTCAACTTA TACTTACCAGATAAAGAACAGATAAATTATCTAAAATATAACTTTAAAGATAATAAATTTGATGCTGTTTATAAAAACAA AAAGAGCAAAGAAAAAAATCAAAGCCATATTGTGTATGCAAAAAAACAAAATACGCGATATTGCTACGGATATTTTAACG ATTTTTTCGTTAAAAATAGAATTACGACTTTTTATAAAATAAAAGATAAATCAGGAAACTATTTAGTAAACTTACATAAT GAAAAATATAGTTTCGCAACACCTAATTCAGATTCTAAAATATATAGAGTTTCACCAGAATTACTTAACAATAGAGATGA TTTTAAAAGAGTATCTAAAGATATTATAAAATCATATAAATATATTAGTTTTGATAAACAAAAGGAAGATATAGTTAAAA ATTTTGGTAAAAACTTATATCATACTAATTATGAGATATGGGTTGGGCTATCACATCAAGCTATATCATGTTTTTCAGTT TTAGATAACATAGATACACAAGAAGCTGCTAATACTTTTATCGATGCTTTATATTATGTTAGATTAATGCAATTATATTA TGGCAAAACTATACCTTTTTTGTGGATTAGTAGCGAAATTGTAAGATATTCTTCATCAGAAACTCACTACTATATACCAA CAGAAGAAAACTTTGAAAATATACTTAAAATTGCTCTTAATAATGCCTCAAAACCAGTAATAGAAAGATTCTTAATTATT CTTAACATATATAATAGTACTATTGATAATAATGCTTTAATTTTGATACGATGCCGTTTACCAATAATATTATTTGAATA TGAAGAGCAGAAACTTAAATTAAAAGCTTTGCAAAAGTGTGCTGATTCTTATAAAAAAAATAATTATAAAAATGAAATTA ACTTTAGTGCTTGGTTTGAATCTATATTTCATGTTCAAAACTTATCCTTATCTCCTAATTATATTGGCAATAATATTTTA ATCTTGAGTTTAGTTGAAGAATTAAAACCAAAATGTAGTGAATATAAAAAAAACATGATTAACCAACAAATTACAGCTAA AGCAAACGAGTTAAACTTTTATCAACTTCTAATAAGACTTATTGAAATATCAACCTATCATAGAATACTTACGAAATCAA TCATAACTAATACAACCTCGTTACTTTATGACATATTAAATAAACCAGAATTTCAAACAATAAATAAATTAATAAATAAG CTATTTATTTATAAAAACAAGGATCTAAATACTGATAAATATAAAGCCTTTCACACTAAGCTTATAACTATTGAAAGTAC CTATAAAAAAATAAATAGCCTATATAAATCAGACTTTTTTAAAAAAATATCGTCATAG Protein sequence : MNDKYELNIYFEKIELPKTADFNMISKHDIKELRVDANLKKKIHLLQFDEDYLAYMRSLRAIHPSKIAMQKIKSIRNKED SFIIAIFSLDKIIHKTKFISFGHKTVIFDFKKLWGLVDFVIVHTSNKTWVNHKLTSFMPSITYCNQNIIHLAYHSDFLYI YHTPEFMDDINVDRENRRELVAKIPDPYWVRADTKENKININSEEENIEKDLKKITKLKNFEISANDIFFSKAIKAAPRL QHKNKSKLFNSLAIENNEKIKRDIIDYAISNAWYKNEGLLENLMTFLDALVVRHLYLIAVYSVYEIEIGIKSVKPEYSKL LKAGLLNKDIQNQLIYDQKKISNIIWLGETFHGLDIEEAEDLCELIDQGDINPKINPINPEKLYRAYKENYGNEALSFRE YKEKYNFLDNDKLREEHANKLSSILEDPKFRVLSYINAFLCSTKNYLVPYGYLGSNPLTYYNCMLETGKRRTSKEAYFAD IRNKLFMVCYLPGFLSSVIADDDFIDWYSNKKENQELLKNSYLNNLYKSKQKYIKDFIDLDIIKLLKQTSSQIKPSYIPV AFRYGAFASTTALIRSNANVSNRMEFELYDSPERLHNQYSEKEEMIMPKSVNNPKDHSIDNGISLFSLNLTNEKEDGLRK VMLKVAQLYNLDFKVGISGNLDQAMTQALILGMATTKKNGDILLDEDQMLYMTYLYCIFMAHSVDHTVDEILMSANTYLL NSEEVKYPIFNIADFFARPVFGLSKDKEFKSLVEKYENSLKPNSKILKENYISRVVTLSEVYEDIYNLNCLYSSLSEGSL YNLLSTHSERHCTLLEQYSRKKKAEIGLVQDGEKIKVVNNYSGYAAINQYQRFVSLGRMYDSGAKYSSSHKKQIEKDFNL YLPDKEQINYLKYNFKDNKFDAVYKNKKSKEKNQSHIVYAKKQNTRYCYGYFNDFFVKNRITTFYKIKDKSGNYLVNLHN EKYSFATPNSDSKIYRVSPELLNNRDDFKRVSKDIIKSYKYISFDKQKEDIVKNFGKNLYHTNYEIWVGLSHQAISCFSV LDNIDTQEAANTFIDALYYVRLMQLYYGKTIPFLWISSEIVRYSSSETHYYIPTEENFENILKIALNNASKPVIERFLII LNIYNSTIDNNALILIRCRLPIILFEYEEQKLKLKALQKCADSYKKNNYKNEINFSAWFESIFHVQNLSLSPNYIGNNIL ILSLVEELKPKCSEYKKNMINQQITAKANELNFYQLLIRLIEISTYHRILTKSIITNTTSLLYDILNKPEFQTINKLINK LFIYKNKDLNTDKYKAFHTKLITIESTYKKINSLYKSDFFKKISS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pdpC | AAP58966.1 | PdpC | Not tested | FPI | Protein | 0.0 | 99 |
| pdpC2 | YP_001892268.1 | PdpC | Not tested | FPI | Protein | 0.0 | 95 |
| pdpC1 | YP_170306.1 | hypothetical protein | Not tested | FPI | Protein | 0.0 | 95 |
| pdpC2 | YP_170614.1 | hypothetical protein | Not tested | FPI | Protein | 0.0 | 95 |
| pdpC1 | YP_001121167.1 | pathogenicity determinant protein pdpC | Virulence | FPI | Protein | 0.0 | 95 |
| pdpC2 | YP_001121570.1 | pathogenicity determinant protein pdpC2 | Virulence | FPI | Protein | 0.0 | 95 |
| pdpC1 | YP_001891773.1 | PdpC | Not tested | FPI | Protein | 0.0 | 95 |
