Gene Information

Name : fliP (CFF8240_0755)
Accession : YP_891929.1
Strain : Campylobacter fetus 82-40
Genome accession: NC_008599
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 764530 - 765264 bp
Length : 735 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
TTGAAACTATTTTTTTTAATATTTTTTGGATTTGTAACCGGTTTTGCAGCCGAGACTGTAACCATACCTACTATAAATTT
AAATCTTAGCGCTCCAGATACGCCCCAGCAGCTAGTTACTAGCCTGAATGTTTTGATTGTGCTTACTCTGCTTGCTCTTG
CACCGTCGCTTATTTTTGTGATGACTAGCTTTTTAAGGCTTATTATTGTATTTTCATTTCTTAGACAAGCTATGGGAACA
CAACAAATGCCGCCTACAAACGTACTTATTTCTTTAGCTTTGATTCTTACGTTTTTTATTATGGAGCCAGTTGCTAAACA
ATCTTATAATGAAGGCATAAAGCCGTATTTAGAAGAGAAAATCGGCTATCAAGATGCTTTTGCTCTTGGAGCAAAGCCAT
TTAAAGAGTTTATGGTAAGAAATACCAGAGAAAAAGATCTAGCTCTTTTTTATCGTATAAGGGCACTACCAAATCCAAAT
ACGGTAGATGATATACCTTTTACTATAGCTGCTCCAGCTTTTATCATCAGCGAATTAAAGACAGCTTTTGAGATAGGATT
TTTGCTGTATTTGCCGTTTTTGGTTATAGATATGGTCGTTAGTTCTGTGCTTATGTCTATGGGTATGATGATGTTGCCGC
CCGTGATGATATCTCTTCCATTTAAGTTGCTTATCTTTGTGCTAGTTGATGGATGGAATTTGCTTATAGGAAACTTAGTG
GCTAGTTTCAAGTAG

Protein sequence : 
MKLFFLIFFGFVTGFAAETVTIPTINLNLSAPDTPQQLVTSLNVLIVLTLLALAPSLIFVMTSFLRLIIVFSFLRQAMGT
QQMPPTNVLISLALILTFFIMEPVAKQSYNEGIKPYLEEKIGYQDAFALGAKPFKEFMVRNTREKDLALFYRIRALPNPN
TVDDIPFTIAAPAFIISELKTAFEIGFLLYLPFLVIDMVVSSVLMSMGMMMLPPVMISLPFKLLIFVLVDGWNLLIGNLV
ASFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-20 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-19 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-19 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-20 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-20 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-22 43
escR AAC31528.1 L0049 Virulence LEE Protein 5e-19 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 6e-19 43
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 5e-19 43
escR AAC38369.1 EscR Virulence LEE Protein 3e-18 43
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 6e-19 43
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-19 43
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-19 43
escR AAK26700.1 EscR Virulence LEE Protein 5e-19 43
escR AAL57527.1 EscR Virulence LEE Protein 5e-19 43
escR CAC81847.1 EscR protein Virulence LEE II Protein 5e-19 43
escR CAI43889.1 EscR protein Virulence LEE Protein 5e-19 43
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-19 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-21 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-19 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_891929.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-36 55
fliP YP_891929.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-34 55
fliP YP_891929.1 flagellar biosynthesis protein FliP VFG2338 Protein 5e-35 54
fliP YP_891929.1 flagellar biosynthesis protein FliP VFG2016 Protein 4e-34 54
fliP YP_891929.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-20 43
fliP YP_891929.1 flagellar biosynthesis protein FliP VFG0827 Protein 3e-19 43
fliP YP_891929.1 flagellar biosynthesis protein FliP VFG0715 Protein 1e-18 43
fliP YP_891929.1 flagellar biosynthesis protein FliP VFG0394 Protein 6e-22 42
fliP YP_891929.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-22 41