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Name : nifJ (CFF8240_0392) Accession : YP_891594.1 Strain : Campylobacter fetus 82-40 Genome accession: NC_008599 Putative virulence/resistance : Virulence Product : pyruvate:ferredoxin (flavodoxin) oxidoreductase Function : - COG functional category : C : Energy production and conversion COG ID : COG0674 EC number : 1.2.7.1 Position : 361290 - 364844 bp Length : 3555 bp Strand : + Note : identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 DNA sequence : ATGGATAAAGTTATGAAGACAATGGACGGTAATGAGGCTGCTGCATACGCGGCTTATGCTTTCACTGAAGTAGCAGGTAT TTATCCTATAACGCCTAGTTCCCCTATGGCTGATTATACTGATATTTGGGCTTCTCAAGGTAAAAAAAATATTTTTGGTA TGCCTGTTAAAGTTGTGGAGATGCAAAGTGAAGCAGGAGCTGCTGGAACTGTGCATGGAAGCTTGCAAGTCGGTGCCCTT ACTACTACTTATACTGCTGCTCAAGGTTTATTATTAAAAATTCCAAATATGTATAAAATAGCAGGACAGATGCTTCCGGG CGTTATTCATGTGGCTGCACGTTCTATAGCTGCTCAGGCTCTTTCTATATTTGGCGATCATCAAGATGTGTATGCCTGTA GACAAACAGGTTTTGCCATGCTTGCAACAGGTTCGGTTCAAGAGGTGATGGATCTAGCAGGAGTTGCCCACTTGGCTGCT ATTAAAGGTCGCGTACCGTTTTTACATTTCTTTGATGGATTTAGAACAAGCCATGAAATTCAGAAAGTTGAAGTTATTGA TTACTCTGTTTTTGATAAGTTAGTAGATAAAGAAGCTATTCAAAAATTTCGCGACGAAAGTATGAATCCAGAGAGTCCAA AAACAAGAGGAACTGCTCAAAATGATGATATATACTTTCAAACAAGAGAGTTGGTAAATAAATTTTATGATGATCTTCCA GATGTGGTAGCTCACTATATGGATGAAATTTCAAAAGAGACAAAACGAGAGTATAAACCATTTGTATATTATGGAGATAA AAAGCCTGATCGTGTTGTTATAGCTATGGGTTCGGTTACGCAAACTTTAGAAGAAGTTGTTGATTATTTAAGAAGCAAAG GCGAGAAAGTAGGTATAGTAAAAGTACATCTATATAGACCTTTTAGTTTGAAATATTTCTTTGATGTGATTCCAAAATCT GTTAAAAAAATAGCTGTTTTAGATAGAACAAAAGAGCCAGGAAGTCTTGGAGAGCCGCTATATCTTGATATAAAAGCAGC GTATTATGGAAGTAAAAAATCCCCAACTATAGTCGGAGGTAGATACGGACTTAGCTCAAAAGACGTAGATCCTGCTCAGA TGGTGGCAGTATTTGAAAATTTAAAACAAGATGAGCCAAAAAACAACTTCACAGTAGGTATAAATGATGATGTAACAAAT TTATCTTTAGAAGTTGGAGATAAAATATCACTTAGCGACGATGACTGTATAGAGTGCTTATTTTATGGACTTGGCGCAGA TGGAACTGTCGGAGCAAATAAAAACTCAATCAAAATTATAGGCGATAAAACCGATCTTTATGCACAAGCTTACTTTGCAT ATGATAGTAAAAAATCAGGCGGCTATACAAGAAGTCACTTAAGATTCGGTAAAAAACCTATCCGCTCAACTTATCTAGTA TCAAATCCTCATTTTGTAGCGTGCTCCGTTGCTGCATATCTTGATATTTATGATGTTGTAGATGGATTAAGAGATGGAGG AACGTTTTTACTTAACTCAATCTGGGATGCCGATGAAACAGTAAAAAGAATTCCAAATAAAGTAAAACGTTTATTAGCTC AGAAAAAAGCAAATTTCTATATACTTAATGCTACAAAATTGGCTTATGATATAGGTCTTGGTAATCGTACAAATACAATT ATGCAATCGGCGTTTTTTAAACTTGCAAATATTATCGACTTTAAAGATGCTCAAAACTATATGAAAGAGTATGCTAAAAA AACATATGCTAAAAAAGGCGATAAGATAGTTGAGATGAACTATGCAGCCATAGATCAAGGCGCTGATAAATTAGTTGAAA TTAAAGTAGATCCAAAATGGGCAAAATTAAAAGATGAAGTTATAAGTGAAAATAAATATATAGGTGACGATTTTATAGAA AAAGTAGTAAAACCTATGAACGCAGCACGCGGAGACGATCTTCCTGTTTCGGTATTTTTGGGTTATGAAGACGGTGGATT CGAAGCTGGTACGACAGAATATGAAAAGCGCGGCGTAGGTGTTATGGTTCCAAAATGGATAGAGGAAAATTGTATCCAGT GTAATCAATGCGCTTTTGTGTGTCCTCACGCAGTTATTAGACCTTTTCTTATAGATGAAAAAGAGCTAAGCGCTGCTCCT AAAGGTGTAAAATCTCATGTTTTAGATGCAAAAGGGAAAGAGATAAAAGAGTTCAAGTATAAAATTCAAGTAAGTCCTCT TGATTGTACAGGTTGCGAACTTTGTGCTCAAAACTGCCCTAGCAAAGAGAAATCTCTTGTTATGGTTCCACTTGGTGAAG AGATGGATAAAGGTGAGCAAGAAAATGCCGATTATCTATTTAAAAATGTAAAATATAAAGATGACTTGATGAGTAAAGAC AGCGTGAAAGGAGCTACATTTGCTCAGCCGTTGTTTGAATTTCACGGTGCATGCCCTGGATGTGGAGAGACTCCTTATAT AACTTTGGTCACAAGATTATTCGGAGAGCATATGATGGTAGCAAACGCTACTGGATGCAGCTCGATTTACGGAGGTTCTG CACCATCTATGCCTTATCGTAAGTCAAATAAAAACGGTCATGGCGTAGCTTGGGCAAATTCGCTTTTTGAAGATAATGCT GAGTTCGGTATGGGCATGGAAGTAGCAACTGAAACTATACGCCACCGCATAGAAAATATTATGCGAGATACCATGGATAA AGTGCCAAATGCACTTGCAGCTCTTTATAAAGATTGGATTGAGTTTAAAGGAGATATCACAAAAACAGCTCAAATAAGAG ATATGTTAGTGCCGCTTCTTGAAGCGAATAAAAAAGTTGATGGAGTAAAAGATCTTCTTAGCTTGAAAAAATATATATCT CGCAAATCTCAATGGATAATAGGCGGCGATGGTTGGGCTTATGATATAGGATATGGCGGACTTGATCATGTTTTAGCAAG CGGTGAGAATGTCAATGTTTTAGTTCTTGATACTGAAGTTTATTCAAACACTGGAGGACAAAGCTCAAAATCTAGCCGTA GTGGTTCTGTCGCACAATTTACATCTAGCGGTAAAGCGGTTCAAAAGAAAGATTTAGGACAAATCGCTATGACATACGGA AATATTTTCGTAGCACAAATCAATTCAAACGCAAGTCAAGCAAATGTAGTAAAAGCTATAGCTGCGGCAGAAGCTTATAA TGGGCCAAGCCTTGTTATAGCGTATTCCCCTTGTATAGCTCACGGTATTAAAGGCGGCTTATCTTTATCTGGAGATCAAG CAGAACTTGCTACAAAATGCGGTTATTGGCCTACATTTATCTATGATCCGCGTTTAGTAAAAGAAGGAAAAAATCCTCTT AAGATCACGTCTAAAGAACCAGAGTGGGATAGATATGAAGAGTTTTTACTAAATGAAGTTCGCTATAATTCGCTTAAAAA GCTAAATCCAGAACATGCAGCTGAATTATTTAGTCAAAATAAAGCAGATTCGCAAAGAAGATATCGTCAGTTAAGACGTC TTGCAAATGCTGATTTCAGCGATGAATTAGCATAA Protein sequence : MDKVMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDIWASQGKKNIFGMPVKVVEMQSEAGAAGTVHGSLQVGAL TTTYTAAQGLLLKIPNMYKIAGQMLPGVIHVAARSIAAQALSIFGDHQDVYACRQTGFAMLATGSVQEVMDLAGVAHLAA IKGRVPFLHFFDGFRTSHEIQKVEVIDYSVFDKLVDKEAIQKFRDESMNPESPKTRGTAQNDDIYFQTRELVNKFYDDLP DVVAHYMDEISKETKREYKPFVYYGDKKPDRVVIAMGSVTQTLEEVVDYLRSKGEKVGIVKVHLYRPFSLKYFFDVIPKS VKKIAVLDRTKEPGSLGEPLYLDIKAAYYGSKKSPTIVGGRYGLSSKDVDPAQMVAVFENLKQDEPKNNFTVGINDDVTN LSLEVGDKISLSDDDCIECLFYGLGADGTVGANKNSIKIIGDKTDLYAQAYFAYDSKKSGGYTRSHLRFGKKPIRSTYLV SNPHFVACSVAAYLDIYDVVDGLRDGGTFLLNSIWDADETVKRIPNKVKRLLAQKKANFYILNATKLAYDIGLGNRTNTI MQSAFFKLANIIDFKDAQNYMKEYAKKTYAKKGDKIVEMNYAAIDQGADKLVEIKVDPKWAKLKDEVISENKYIGDDFIE KVVKPMNAARGDDLPVSVFLGYEDGGFEAGTTEYEKRGVGVMVPKWIEENCIQCNQCAFVCPHAVIRPFLIDEKELSAAP KGVKSHVLDAKGKEIKEFKYKIQVSPLDCTGCELCAQNCPSKEKSLVMVPLGEEMDKGEQENADYLFKNVKYKDDLMSKD SVKGATFAQPLFEFHGACPGCGETPYITLVTRLFGEHMMVANATGCSSIYGGSAPSMPYRKSNKNGHGVAWANSLFEDNA EFGMGMEVATETIRHRIENIMRDTMDKVPNALAALYKDWIEFKGDITKTAQIRDMLVPLLEANKKVDGVKDLLSLKKYIS RKSQWIIGGDGWAYDIGYGGLDHVLASGENVNVLVLDTEVYSNTGGQSSKSSRSGSVAQFTSSGKAVQKKDLGQIAMTYG NIFVAQINSNASQANVVKAIAAAEAYNGPSLVIAYSPCIAHGIKGGLSLSGDQAELATKCGYWPTFIYDPRLVKEGKNPL KITSKEPEWDRYEEFLLNEVRYNSLKKLNPEHAAELFSQNKADSQRRYRQLRRLANADFSDELA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AFJ97267.1 | pyruvate ferredoxin | Virulence | Not named | Protein | 0.0 | 77 |
