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Name : CFF8240_1397 (CFF8240_1397) Accession : YP_892538.1 Strain : Campylobacter fetus 82-40 Genome accession: NC_008599 Putative virulence/resistance : Virulence Product : VI polysaccharide biosynthesis protein VipA/tviB Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : 1.1.1.- Position : 1379970 - 1381187 bp Length : 1218 bp Strand : - Note : identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 DNA sequence : ATGAGAGATATAAAAATAGGGATTATCGGTCTTGGATACGTCGGAATGCCTTTAGCTGCGGCATTTAGCGACGCTTTTAG CGTTGTAGGATTTGACCTTAATGAAAAAAGAATAAACGAGCTAAAAAACGGTATCGATAGAACTCTTGAATTAGATGAAG AACAGATGGCTAAAGTACTAAAAAACGGTATGAAATTTAGCGTAAATTTGGACGATATAAAAGAGTGCAACTTTTACATA GTTACGGTTCCAACTCCGATCGATAAAAATAATCGTCCTGATCTTACTCCGCTTTATAAATCAAGCGCGAGTTTAGCCAA AGTGCTTAAAAAGGGCGATATAGTAGTGTATGAAAGTACCGTTTATCCGGGTGTCACAGAAGATGAATGCGTGCCTGTGC TTGAAACTAGCGGGCTGAAATTCGGTGTGGATTTTGAGTGCGGATACAGCCCTGAGCGTATAAATCCGGGTGATAAAGAG CACACGGTCACGAAAATCAAAAAAATCATCTCCGCAAGTAGTTCTGCAGCCCTTAAAACAGTAGAAGACGTTTATAGCAA GATCATTAAAGCAGGAGTTTATAAAGCTAGTAGTATAAAAGTAGCCGAAGCCGCAAAAGTCATAGAAAATACGCAGCGCG ACATAAATATTGCCTTTGTAAATGAGCTATTGATGATATTTGACAAGATGAAGATAGATACCAACGAAGTGCTTGACGCG GCCGCGACTAAGTGGAACTTTTTAAATTTCCGCCCAGGACTCGTGGGAGGCCACTGCATCGGTGTAGATCCATACTATCT TACGCATAAAGCCGAAGAGATCGGCTATCACCCAGAAATCATTTTAGCAGGACGAAGAATAAATGATAATATGGGAATTT ACCATGCAAATCAGTCTGTTAAAATGATGATAAAAAACGGATTAAAAGTAAATGGTGCTAAGGTTTTAGTGCTTGGAATC ACTTTTAAAGAAAACTGCCCCGATATCCGCAATTCAAGAGTTATTGACGTGATAAAAGAGCTCAAAGAGTTTGGTTGTAA CGTAGATGTTTATGATCCTTGGGCGGACGCAAACGATGTGAAAAAAGAGTACGGCGTAGAGCTTTTAGAGAGTTTAAATT TAAGCGGACACGACTGCGTGATCTTAGCTGTGGCACACAAAGAGTTCGCTAAAATAGACTTCGGCAGATGTTTATCTTAT AAAATCAAACGAATTTAA Protein sequence : MRDIKIGIIGLGYVGMPLAAAFSDAFSVVGFDLNEKRINELKNGIDRTLELDEEQMAKVLKNGMKFSVNLDDIKECNFYI VTVPTPIDKNNRPDLTPLYKSSASLAKVLKKGDIVVYESTVYPGVTEDECVPVLETSGLKFGVDFECGYSPERINPGDKE HTVTKIKKIISASSSAALKTVEDVYSKIIKAGVYKASSIKVAEAAKVIENTQRDINIAFVNELLMIFDKMKIDTNEVLDA AATKWNFLNFRPGLVGGHCIGVDPYYLTHKAEEIGYHPEIILAGRRINDNMGIYHANQSVKMMIKNGLKVNGAKVLVLGI TFKENCPDIRNSRVIDVIKELKEFGCNVDVYDPWADANDVKKEYGVELLESLNLSGHDCVILAVAHKEFAKIDFGRCLSY KIKRI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 2e-110 | 61 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 2e-110 | 61 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 4e-102 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CFF8240_1397 | YP_892538.1 | VI polysaccharide biosynthesis protein VipA/tviB | VFG0431 | Protein | 8e-111 | 61 |
