|
Name : MSMEG_6245 (MSMEG_6245) Accession : YP_890464.1 Strain : Mycobacterium smegmatis MC2 155 Genome accession: NC_008596 Putative virulence/resistance : Resistance Product : chloramphenicol resistance protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 6310092 - 6311297 bp Length : 1206 bp Strand : - Note : identified by match to protein family HMM PF06779; match to protein family HMM PF07690 DNA sequence : ATGCCTTTTTCGCTCTACCCTCTTGCCGTGGCCGTATTCGCCATGGGTACCTCGGAATTCATGCTCGCCGGTCTGGTGCC GGACATCGCCGCCGACCTCGGTGTATCGATCGGATCGGCTGGGCTGCTCACGTCGGCATTTGCCGTGGGGATGGTCGTCG GTGCGCCGTCGATGGCGGCGTTGACCCGTCGATGGCGTGCCCGGGTCAGTTTGTCGGCCTTCCTGCTGACCTTCGCCTTG GTGCACGTGCTCGGCGCTGTCACAACAAGTTTCGGCGTTCTGTTGGTCACCCGGCTGGTCGCGGCGGTTGCCAATGCGGG CTTTCTCGCGGTCGCGTTGAGCACGGCGGCCACCCTCGTGCCGGCGGGACGCCAAGGTCGCGGGCTGGCGGTGCTGCTGG CGGGCACGACGCTGGCGACCATCGCCGGAGTGCCGGGCGGCGCGGTGCTGGGCACCATGCTCGGCTGGCGGGCCACCTTC TGGGCGATAGCGCTGCTGTGTCTGCCCGCTGTTGTCGGTATCGCCACAGCATTACCGGCGGGTGCAGGACGCGCCGGCTG GCCGGTGGCGGGTGCCTCGCTGTGTGATGAGCTAGCGCAACTGGGGCGTAAGCGCCTGGCGTTGGCGATGCTGCTCGCCG CCCTGGTGAATGCCGGTACGTTCGCGACGTTCACGTTCCTGGCACCGATCGTCACCGAATCGGCGGGACTGGGGCGACTG TGGGTCTCGGTTGTGCTGCTGCTGTTCGGGTTTGGGTCGTTCATCGGCGTGACCGTCGCGGGACGTCTGTCCGACACACG TCCCGGCATCGTCATCGGAGCCGGGGGCCCTGCGTTGTTGGCGGGTTGGGCGGCGCTTGCGCTCCTGTCGAGCCAACCGG TCGCGCTTCTGCCGCTGGCATTCGTGCAGGGCGCGTTGTCGTTCGCCGTGGGCAGCACCCTGATCACGAGGGTGCTCTAT GAGGCGTCCGCAGCCCCCACGATGGGTGGGGCGTATGCGACGGCGGCGTTGAACGTCGGCGCTGCCGGTGGTCCGGTGGC CGCAGCGGCTGCTCTCGGAAATCACGCGAATGTCGTTGCGCCGGTCTGGGTCAGCAGCGTTATGGTCGCGCTGGCGTTAC TGATTGCCGTGCCGATGCTGAAAATCGTTGCGCCCCGCCCTAACCCAGCGACTTCCACACCTCCGCTTGGAGGTAACTGC GGCTAG Protein sequence : MPFSLYPLAVAVFAMGTSEFMLAGLVPDIAADLGVSIGSAGLLTSAFAVGMVVGAPSMAALTRRWRARVSLSAFLLTFAL VHVLGAVTTSFGVLLVTRLVAAVANAGFLAVALSTAATLVPAGRQGRGLAVLLAGTTLATIAGVPGGAVLGTMLGWRATF WAIALLCLPAVVGIATALPAGAGRAGWPVAGASLCDELAQLGRKRLALAMLLAALVNAGTFATFTFLAPIVTESAGLGRL WVSVVLLLFGFGSFIGVTVAGRLSDTRPGIVIGAGGPALLAGWAALALLSSQPVALLPLAFVQGALSFAVGSTLITRVLY EASAAPTMGGAYATAALNVGAAGGPVAAAAALGNHANVVAPVWVSSVMVALALLIAVPMLKIVAPRPNPATSTPPLGGNC G |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cmx | YP_005160007.1 | chloramphenicol exporter | Not tested | Not named | Protein | 1e-66 | 66 |
| cmx2 | YP_001800935.1 | chloramphenicol exporter | Not tested | Not named | Protein | 1e-66 | 66 |
