Gene Information

Name : MSMEG_5396 (MSMEG_5396)
Accession : YP_889637.1
Strain : Mycobacterium smegmatis MC2 155
Genome accession: NC_008596
Putative virulence/resistance : Virulence
Product : KDP operon transcriptional regulatory protein KdpE
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5475722 - 5476414 bp
Length : 693 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGACCGCCCCGATCAAGACCCGCGTGTTGGTGATCGACGACGAACCGCAGATCTTGCGGGCCCTGCGCATCAACCTGTC
GGTACGAGGCTACGAGGTGCGCACCGCGGCAAGCGGCGCCGAGGCGTTGCACAGCGCCGCCGACCACCGACCCGACGTCA
TCGTGCTCGATCTCGGGTTGCCCGACATGTCCGGGATCGAGGTGCTGCACGGTCTGCGGGGATGGTTGAGCGCCCCGGTG
ATCGTGCTCTCGGCGCGCACCGACTCCTCCGACAAGGTCGAGGCCCTCGATGCCGGGGCCGACGACTATGTCACCAAACC
CTTTGGCATGGACGAGTTCCTGGCCCGCTTACGCGCGGCCGCGCGTCGCGCCGCGGTGCCCGAGACCGATCAACCGGTCA
TCGAGACCACATCGTTCACCGTTGATCTCGCCGCGAAGAAGGTGATCAAGAACGGCGCCGAGGTGCACCTGACGCCCACC
GAGTGGGGCATGCTGGAAATGCTGGTGCGCAACCGCGGCAAGCTCGTCGGCCGCGAGGAACTGCTCCGCGAGGTGTGGGG
CCCGGCCTACGCCACCGAGACCCACTATTTACGCGTCTACCTCGCGCAGCTTCGCCGTAAGCTCGAAGACGACCCCTCGC
ACCCGGTGCACCTGCTCACCGAGGCAGGCATGGGTTACCGCTTCGAGGCGTGA

Protein sequence : 
MTAPIKTRVLVIDDEPQILRALRINLSVRGYEVRTAASGAEALHSAADHRPDVIVLDLGLPDMSGIEVLHGLRGWLSAPV
IVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAARRAAVPETDQPVIETTSFTVDLAAKKVIKNGAEVHLTPT
EWGMLEMLVRNRGKLVGREELLREVWGPAYATETHYLRVYLAQLRRKLEDDPSHPVHLLTEAGMGYRFEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0031 YP_251946.1 hypothetical protein Not tested SCCmec Protein 3e-30 41
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 5e-35 41
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 4e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MSMEG_5396 YP_889637.1 KDP operon transcriptional regulatory protein KdpE VFG1390 Protein 9e-27 41