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Name : MSMEG_4388 (MSMEG_4388) Accession : YP_888663.1 Strain : Mycobacterium smegmatis MC2 155 Genome accession: NC_008596 Putative virulence/resistance : Unknown Product : ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG1123 EC number : - Position : 4479425 - 4481053 bp Length : 1629 bp Strand : + Note : identified by match to protein family HMM PF00005 DNA sequence : ATGAGTGAGTTGTTGCTGAACGTGGCGGACCTCACGGTCGGCTTCGGCGACCATGAGGTGGTGCGCGGCCTGTCCTTCCA TGTCGCGCCGGGCGAATGCTTCGCGATCGTCGGCGAATCCGGTTCGGGCAAGAGCGTCACCGCCCGCACCATCCTCGGCC TGGCCGGGCCCACCGCACGGGTCGGTGCCACCCGTCTGGAACTCAACGGAAAATCCCTGCTGGGCAACAAAGACCGGGAT TGGCGACGCATCCGGGGCCGCGAGGTCGGTTTCGTGCTCCAGGACGCGCTGGTGTCGCTGGACCCGCTGCGCAAGGTGGG CGACGAGATCGCCGAGACACTGCGCCTGCACAGGTTCGGCAACAAGGCCGCCCGCCGCAGGCACGTCCTGGAACTGCTCG AGGCCGTCGGTGTTCCCGAACCCGAACTCAAGGCCCGGCAACTGCCCGGCGAACTGTCCGGCGGGCAGCGCCAGCGTGCC CTGATCGCCTCGGCCATCGCGCTCGACCCGCCGCTGGTGATCGCCGACGAGCCCACCACGGCCCTGGACGTCACAGTGCA GGCCCAGATCCTGGATCTGCTGGCCGCGATGAAAAACAAGGGCACGGGCCTGGTGTTGATCAGCCACGACCTCGCGGTGG TGGGCCGGTTGGCTGATCGGGTCGCGGTCATGCGCAACGGTGTTCTGGTCGAGCAGGGTCCGGTCGCAGAGGTGCTGGCC GCGCCGTCACACCCCTACACCCAGACCCTGCTGGACGCGGTCCCGGCCGCGCACCGCAAGGGCACCCGCCTGTCGCACCA ACCCGCGCGCACGATGCACGGCACGCGGCAGACCGACGACGGTGTGCTGCTGGCGGCCCGCAACCTGGTCAAGCGGTTTC GCGGACCCGACGGCGTGGAGCGCACGGCGGTCAACGACGTGTCGTTCGAGATCGGCGTCGGCGAAACCCTCGGCATCGTC GGGGAATCCGGTTCGGGTAAGACCACCACGGCCCGCATGGCGCTCGCGCTCACCGAGCCCGACGAGGGCACGGTGCACCT GCTCGGCCAGCCGTGGAGTGAGCTCACCGAGAAGGAGCGCCGCAGCCGGCGCCGCCGCATCTCGGTGGTGTACCAGGATC CGCTGAGCTCGTTCGACCCACGCTGGACCGTGCGGCGCATCCTCGCCGATGCGCTCCCCGCCGAGCGCTACCCGGATGCC AAGGCCCGCGACGCGCGGGTGCGTGAACTGCTCGACGATGTCGGTCTGAGCTCCGAGCAACTCGATCGCCGACCGTTACT GCTCTCCGGTGGGCAGCGTCAGCGCGTGGCGATCGCGCGTGCCCTGGCCCCGGAGCCGTCGCTGATCGTGTGTGACGAAC CGGTGTCCGCGCTCGACGTCACGATTCAGGCGCAGGTGCTGGACCTGCTGACCGATCTGCAGGAGCAACTCGGGCTGAGC TATTTGTTCATCTCGCACGACCTGGGGGTCATCCACCACGTGGCCGATCGCGTGCTGGTGATGCGGGAGGGCCGGGTGGT CGAATCCGGATCGGCCGCACAGATCTTCGACGCCCCGCAGGACCCGTACACCCAGCAGTTGCTGGCCAGTCTTCCCGCCG CCGAACCGATGTCAGGAGCCGTACTGTGA Protein sequence : MSELLLNVADLTVGFGDHEVVRGLSFHVAPGECFAIVGESGSGKSVTARTILGLAGPTARVGATRLELNGKSLLGNKDRD WRRIRGREVGFVLQDALVSLDPLRKVGDEIAETLRLHRFGNKAARRRHVLELLEAVGVPEPELKARQLPGELSGGQRQRA LIASAIALDPPLVIADEPTTALDVTVQAQILDLLAAMKNKGTGLVLISHDLAVVGRLADRVAVMRNGVLVEQGPVAEVLA APSHPYTQTLLDAVPAAHRKGTRLSHQPARTMHGTRQTDDGVLLAARNLVKRFRGPDGVERTAVNDVSFEIGVGETLGIV GESGSGKTTTARMALALTEPDEGTVHLLGQPWSELTEKERRSRRRRISVVYQDPLSSFDPRWTVRRILADALPAERYPDA KARDARVRELLDDVGLSSEQLDRRPLLLSGGQRQRVAIARALAPEPSLIVCDEPVSALDVTIQAQVLDLLTDLQEQLGLS YLFISHDLGVIHHVADRVLVMREGRVVESGSAAQIFDAPQDPYTQQLLASLPAAEPMSGAVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 3e-79 | 42 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 3e-79 | 42 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 3e-79 | 42 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 3e-79 | 42 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 7e-95 | 42 |
