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Name : MAV_0556 (MAV_0556) Accession : YP_879836.1 Strain : Mycobacterium avium 104 Genome accession: NC_008595 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/mecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 538716 - 541184 bp Length : 2469 bp Strand : + Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGCTCAACCACAACTACATCGGCACCGAGCACATCCTGCTGGGTTTGATCCACGAGGGCGAGGGCGTGGCGGCCAAGTC GCTGGAGTCGCTGGGCATCTCGCTGGAGGGCGTCCGCAGCCAGGTCGAGGAGATCATCGGCCAGGGCCAGCAGGCGCCGT CCGGACACATCCCGTTCACCCCGCGCGCCAAGAAGGTGCTCGAGCTGAGCCTGCGCGAGGCGCTGCAGCTCGGCCACAAC TACATCGGCACCGAGCACATTCTGCTGGGCCTGATCCGCGAGGGTGAGGGCGTGGCCGCCCAGGTGCTGGTCAAGCTGGG CGCCGAGCTGACCCGGGTGCGCCAGCAGGTGATCCAGCTGCTCTCCGGCTACCAGGGTAAGGAGGCCGCCGAGGCCGGCA CCGGTGGGCGCGGCGGCGAGTCCGGCAGCCCATCCACGTCGTTGGTGCTCGACCAGTTCGGCCGCAACCTGACCGCCGCC GCGATGGAGGGCAAGCTGGACCCGGTCATCGGCCGCGAGAAGGAAATCGAGCGGGTGATGCAGGTGCTGAGCCGGCGCAC CAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGACGGCCGTCGTCGAGGGCCTGGCGCAGGCCATCGTGC ACGGCCAGGTGCCCGAGACGCTGAAGGACAAGCAGCTCTACACCCTGGACCTGGGTTCGCTGGTGGCGGGCTCGCGCTAC CGCGGTGACTTCGAGGAGCGCCTGAAGAAGGTGCTCAAGGAGATCAACACCCGCGGCGACATCATCCTGTTCATCGACGA GCTGCACACGCTGGTCGGTGCGGGTGCCGCCGAGGGCGCGATCGACGCGGCCAGCATCCTCAAGCCGAAGCTGGCTCGCG GCGAGCTGCAGACCATCGGCGCCACCACGCTCGACGAGTACCGCAAGTACATCGAGAAGGACGCCGCGCTGGAGCGTCGG TTCCAGCCGGTGCAGGTGGGTGAGCCGACGGTGGAGCACACCATCGAGATCCTCAAGGGGCTGCGCGACCGCTACGAGGC GCACCACCGGGTGTCCATCACCGACTCGGCGATGGTGGCGGCCGCGACGCTGGCGGACCGCTACATCAATGACCGCTACC TGCCGGACAAGGCGATCGACCTGATCGATGAGGCGGGGGCGCGGATGCGGATCCGCCGGATGACCGCGCCGCCGGACCTG CGCGAGTTCGACGAGAAGATCGCCGAGGCGCGCCGGGAGAAGGAATCGGCGATAGACGCCCAGGACTTCGAGAAGGCGGC CAGCCTGCGCGACCGGGAGAAGCAGCTCGTCGCGCAGCGCGCCGAGCGCGAAAAGCAGTGGCGCTCCGGCGACCTCGACG TGGTCGCCGAGGTGGACGACGAGCAGATCGCCGAGGTGCTGGGCAACTGGACCGGCATCCCGGTGTTCAAGCTGACCGAG GCCGAGACCACGCGCCTGCTGCGCATGGAGGACGAGCTGCACAAGCGGATCATCGGCCAGGAGGACGCCGTCAAAGCGGT CTCCAAGGCGATCCGCCGCACCCGCGCCGGGTTGAAGGACCCCAAGCGGCCGTCGGGCTCGTTCATCTTCGCCGGCCCGT CCGGTGTCGGTAAGACCGAGCTGTCCAAGGCGCTGGCCAACTTCCTGTTCGGCGACGACGACGCGCTCATCCAGATCGAC ATGGGCGAGTTCCACGACCGGTTCACCGCCTCGCGGCTGTTCGGCGCCCCGCCGGGATACGTCGGCTACGAGGAGGGCGG CCAGCTCACCGAGAAGGTGCGGCGCAAGCCGTTCTCGGTGGTGCTGTTCGACGAGATCGAGAAGGCTCACCAGGAGATCT ACAACAGCCTGTTGCAGGTCCTCGAGGACGGCCGGCTCACCGACGGCCAGGGCCGCACGGTCGACTTCAAGAACACCGTG CTGATCTTCACCTCGAACCTCGGCACGTCCGACATCTCCAAGCCGGTCGGCCTGGGCTTCACCCAGGGTGGCGGTGAGAA CAACTACGAGCGGATGAAGCAGAAGGTCAACGACGAGCTGAAGAAGCACTTCCGCCCGGAGTTCCTCAACCGCATCGACG ACATCATCGTCTTCCACCAGCTGACTCGCGACGAGATCATCCGGATGGTCGACCTGATGATCACCCGGGTCGCCGGCCAG CTCAAGAGCAAGGACATGGACCTGGTGCTCACCGACAAGGCCAAGGCCCTGCTGGCCAAGCGCGGCTTCGACCCGGTGCT GGGTGCCCGCCCGCTGCGGCGCACCATCCAGCGCGAGATCGAGGACCAGCTCTCCGAGAAGATCCTCTTCGAGGAGGTCG GGCCCGGTCAGATCGTCACGGTCGACGTCGACAACTGGGACGGCGAAAGCGCCGGCGAGGACGCGGTGTTCACCTTCACC GGTACCCGCAAGCCGCCGGCCGAGCCGGACCTGGCCAAGGCCGGGGCGCACAGCGCCGACCCGCAGTAG Protein sequence : MLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHN YIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAA AMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGQVPETLKDKQLYTLDLGSLVAGSRY RGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERR FQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYINDRYLPDKAIDLIDEAGARMRIRRMTAPPDL REFDEKIAEARREKESAIDAQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLTE AETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQID MGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTV LIFTSNLGTSDISKPVGLGFTQGGGENNYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTRDEIIRMVDLMITRVAGQ LKSKDMDLVLTDKAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEVGPGQIVTVDVDNWDGESAGEDAVFTFT GTRKPPAEPDLAKAGAHSADPQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 81 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| MAV_0556 | YP_879836.1 | negative regulator of genetic competence ClpC/mecB | VFG0079 | Protein | 0.0 | 60 |
| MAV_0556 | YP_879836.1 | negative regulator of genetic competence ClpC/mecB | VFG0080 | Protein | 8e-148 | 50 |
