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Name : lysS (MAV_0554) Accession : YP_879834.1 Strain : Mycobacterium avium 104 Genome accession: NC_008595 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 536335 - 537834 bp Length : 1500 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGAGTCCCGCCCCAGACGCCGACATTCCCGAGCAGTACCGGATCCGCCGGGACAAGCGCGCGCGGCTGCTCGCCGAGGG GCACGACCCGTACCCGGTCGCCGTCGAACGCACCCACACGCTGGCGCAGGTGCGCGCCGCCCACCCCGACCTGCCCGTCG ACACCGCGACCGACGACGTGGTCGGCGTCGCCGGCCGGGTGATCTTCGCGCGCAACTCCGGCAAGCTGTGCTTCGCCACG CTGCAGGAGGGCGACGGCACCACCCTGCAGGTGATGGTCAGCCTGGACAAGGTGGGCCGCGAAGCCCTGGACGCGTGGAA GGCCGACGTCGACCTGGGCGACATCGTCTCCGTGCACGGCACCCTGATCAGCTCCCGGCGCGGCGAACTGTCCGTGCTCG CCGACTCGTGGCGGATGGCGTCCAAGTCGTTGCGTCCGCTGCCCGTCGCGCACAAGGAGATGAGCGAAGAGGCGCGGGTG CGGCAGCGCTACGTCGACCTGATCGTGCGCCCGCAGGCGCGCACGGTCGCCCGGCAGCGGATCGCGGTGATCCGGGCGAT CCGCAACGCCTTGGAACGGCGCGGGTTTCTCGAAGTCGAAACCCCAATGTTGCAGACGCTGGCCGGGGGCGCGGCTGCAC GGCCGTTCGTCACCCATTCCAACGCGCTCGACATCGATCTCTACCTGCGGATCGCCCCGGAACTGTTCCTCAAGCGCTGC GTCGTCGGTGGTTTCGATAAGGTTTTCGAACTAAATCGCGTGTTCCGAAACGAAGGTGCGGATTCCACCCATTCTCCGGA ATTCTCCATGCTGGAGACCTACCAGGCCTACGGAACGTATGACGATTCGGCGGTGGTGACGCGCGAGCTTATTCAAGAGG TGGCCGACGAGGCCATCGGAACCCGACAACTACCGCTGCCCGACGGCAGCGTCTACGACATAGACGGAGAATGGGCTTCT ATAGAAATGTACCCGTCGCTGTCGGCGGCGCTCGGTGAGGAGATCACCCCGCAGACCACGGTGGAAAAGCTGCTCGGCAT CGCCGAGCGGCTGGGCGTCGAGATCCCCCGCGACCGCGGCTACGGGCACGGCAAGATCGTCGAGGAGCTGTGGGAGCACA CCGTGGGCGACACGCTCACCGCGCCCACGTTCGTGCGGGATTTCCCGGTCGAGACAACGCCTTTGACGCGTCAGCACCGC AGCATCGACGGCGTCACCGAGAAATGGGACCTGTACGTGCGTGGGGTCGAGCTGGCCACCGGCTACTCGGAGTTGACCGA TCCCGTGGTGCAGCGCGAGCGGTTCGCCGCCCAGGCGCGTGCGGCGGCCGCCGGCGACGACGAGGCCATGGTGCTCGACG AAGACTTTCTCGCCGCGCTCGAGTATGGGATGCCGCCCTGCACCGGAACGGGAATGGGTATCGACCGGTTGTTGATGACA TTGACCGGGCTGTCAATTCGGGAGACAGTTTTGTTCCCCATCGTTCGGCCGCATTCGTAG Protein sequence : MSPAPDADIPEQYRIRRDKRARLLAEGHDPYPVAVERTHTLAQVRAAHPDLPVDTATDDVVGVAGRVIFARNSGKLCFAT LQEGDGTTLQVMVSLDKVGREALDAWKADVDLGDIVSVHGTLISSRRGELSVLADSWRMASKSLRPLPVAHKEMSEEARV RQRYVDLIVRPQARTVARQRIAVIRAIRNALERRGFLEVETPMLQTLAGGAAARPFVTHSNALDIDLYLRIAPELFLKRC VVGGFDKVFELNRVFRNEGADSTHSPEFSMLETYQAYGTYDDSAVVTRELIQEVADEAIGTRQLPLPDGSVYDIDGEWAS IEMYPSLSAALGEEITPQTTVEKLLGIAERLGVEIPRDRGYGHGKIVEELWEHTVGDTLTAPTFVRDFPVETTPLTRQHR SIDGVTEKWDLYVRGVELATGYSELTDPVVQRERFAAQARAAAAGDDEAMVLDEDFLAALEYGMPPCTGTGMGIDRLLMT LTGLSIRETVLFPIVRPHS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 5e-142 | 64 |
