Gene Information

Name : NT01CX_1523 (NT01CX_1523)
Accession : YP_877604.1
Strain : Clostridium novyi NT
Genome accession: NC_008593
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein Cap1B
Function : -
COG functional category : D : Cell cycle control, cell division, chromosome partitioning
COG ID : COG0489
EC number : -
Position : 704173 - 704877 bp
Length : 705 bp
Strand : +
Note : identified by match to protein family HMM TIGR01007

DNA sequence : 
ATGCTTATTGTAGAAAAAGAACCTAAGTCCATTGCAGCAGAAGCATATAGAACTTTAAGGACTAATATACAGTATTCTTC
ATTTGATAAGGAATTAAAAACAATAATAGTAACAAGCTCAGGACCTTCAGAAGGAAAGTCTACAACATCAGGTAATTTAG
CTTTGTCTATGGCTCAATCAGATAGAAAAGTATTATTAATAGATTGCGATCTTAGAAAACCTACAGTACATAAAAAGTTT
CATATATCCAATGAAAAAGGATTGTCTAATTATTTAGTTGGAGAGGTCCCTTTTGAAGAAGTAGTAGTTAATTATAATGA
AAATTTATATTTGCTTCCGGCAGGAACTATTCCTCCTAATCCAGCAGAAATGGTAGCATCTAAGAAAATGAAAAAATTCT
TGGAATCTTTAAAAGAAAATTTTGATTACATTGTTATAGATACGCCACCAGTAATTGCTGTTACAGATGCACAAATATTA
TCCACAATAGTAGATGGTGTACTTCTTGTAGCTGCTTCAGGACAAGCTGAAAAGGAAGCTGCTATAAGAGCAAAGGAACT
TTTATTAAAAGTAAAAGCAAATATATTAGGGGTAGTACTAACTAAGGTCCCTTTAAATGAAGGAAAAGGATATGGGTATA
GTTATTATTACTATTACGGAGATGAAGATGAAAAGAGCAAGAAAAGGAGAAAAAGTAAAAAATGA

Protein sequence : 
MLIVEKEPKSIAAEAYRTLRTNIQYSSFDKELKTIIVTSSGPSEGKSTTSGNLALSMAQSDRKVLLIDCDLRKPTVHKKF
HISNEKGLSNYLVGEVPFEEVVVNYNENLYLLPAGTIPPNPAEMVASKKMKKFLESLKENFDYIVIDTPPVIAVTDAQIL
STIVDGVLLVAASGQAEKEAAIRAKELLLKVKANILGVVLTKVPLNEGKGYGYSYYYYYGDEDEKSKKRRKSKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 1e-36 43
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT01CX_1523 YP_877604.1 capsular polysaccharide biosynthesis protein Cap1B VFG1298 Protein 5e-32 41
NT01CX_1523 YP_877604.1 capsular polysaccharide biosynthesis protein Cap1B VFG1368 Protein 1e-25 41