Gene Information

Name : NT01CX_1298 (NT01CX_1298)
Accession : YP_877381.1
Strain : Clostridium novyi NT
Genome accession: NC_008593
Putative virulence/resistance : Virulence
Product : pyruvate kinase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0469
EC number : -
Position : 426911 - 428332 bp
Length : 1422 bp
Strand : +
Note : identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064

DNA sequence :
ATGCAAAGAACTAAGATGGTTTTTACAATTGGACCTGCAAGTGAGAACAAAGAATATTTAAGAGAACTTATTTTAGCTGG
AATGAGTGCAGCTAGACTTAACTTTTCACATGGTGATTTTGAAGAACATGGTGCAAGAATTAAGACTATAAGAGAATTAA
GAAAAGAATTAAACAAGCAAGTAGCTATAGTTCTAGATACTAAAGGACCTGAAATCAGAACTAAAGAATTTGATGGAAAA
GTACAATTAGTTAAAGGAAGCAAATTCACTGTATATTGTACAGAAGACGTAATGGGAGATGCAACTAAATGTAGCATCAC
TTACACTGAACTATACAAAGACGTTAAACCAGGAAACACTATCTTAATAGATGATGGTTTAGTAGCTCTTACTGTAGAAT
CAATCGAAGATACTAAAATCCACTGTGTAGTTGCAAACGACGGTGTTGTATCTAGCAAAAAGGGAGTTAACGTTCCAAAC
GTAAGCATCAAACTTCCAGCTATCACTGAAAAAGACAAGGGAGATTTAATCTTCGGTTGTCAAGAAGAAGTTGATATGGT
TGCTGCTTCATTCATAAGAAAAGCAGATGATGTTAAAGCTATAAGAAAAGTTTTAGAAGAAAATGGTGGAAGCCACATAA
GAATATTCTCTAAAATAGAAAACCAAGAAGGTGTAGATAATGTTGATGAAATATTAGAAGCATCTGATGGTATCATGGTA
GCTAGAGGAGACATGGGAGTTGAAATTCCTATAGAACAAGTTCCAATAGTTCAAAAAATGATAATCAACAAATGTAACAA
AGCTGGAAAACCAGTTATAACAGCAACACAAATGTTAGATTCTATGATCAGAAACCCAAGACCAACAAGAGCAGAAGCAT
CAGACGTAGCAAACGCTATATTTGATGGAACAGATGCTACAATGCTAAGTGGAGAATCTGCAAACGGAGATTACCCAATC
CAAGCAGCTCAAACTATGGCTAGAATAGCTCAAACTGCAGAAAAGTATGTTGATCACAAAGCTGCTCTAGAAAAGAGAAA
AGCAGAAAAAGTAACTAATGTAGCAGACGCTATAAGCTTAAGCGCTTGTGAAGCAGCTATGGAATTAAACGCTGCTGCAA
TCATCGTTCCAACTAAATCTGGAGCAACTGCTAGAATGATCGCTAAATATAGACCAGCATGCCCAATCATCGCTGTAACA
CCAGAAGATAAGATAACAAGAAGATTATCTTTATCAAGCGGAGTATATCCAATAACTGCTACAGCATTCAACTCAACTGA
TGAAATGATCGAAAAATCAGTTGCATTTGCTAAAGAAGCAGGACACGTTAAAGATGGAGATACTGTTGTTGTAGCTGCTG
GACTTCCAATACATGAATCAGGCACTACTAACATGATCAAAGTACACGTTGTAGGAAAATAG

Protein sequence :
MQRTKMVFTIGPASENKEYLRELILAGMSAARLNFSHGDFEEHGARIKTIRELRKELNKQVAIVLDTKGPEIRTKEFDGK
VQLVKGSKFTVYCTEDVMGDATKCSITYTELYKDVKPGNTILIDDGLVALTVESIEDTKIHCVVANDGVVSSKKGVNVPN
VSIKLPAITEKDKGDLIFGCQEEVDMVAASFIRKADDVKAIRKVLEENGGSHIRIFSKIENQEGVDNVDEILEASDGIMV
ARGDMGVEIPIEQVPIVQKMIINKCNKAGKPVITATQMLDSMIRNPRPTRAEASDVANAIFDGTDATMLSGESANGDYPI
QAAQTMARIAQTAEKYVDHKAALEKRKAEKVTNVADAISLSACEAAMELNAAAIIVPTKSGATARMIAKYRPACPIIAVT
PEDKITRRLSLSSGVYPITATAFNSTDEMIEKSVAFAKEAGHVKDGDTVVVAAGLPIHESGTTNMIKVHVVGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1744 NP_456147.1 pyruvate kinase Not tested SPI-2 Protein 5e-99 51
pykF YP_216386.1 pyruvate kinase Not tested SPI-2 Protein 4e-99 51
pykF NP_805051.1 pyruvate kinase Not tested SPI-2 Protein 4e-99 51
pykF CAA68205.1 pyruvate kinase like protein Not tested SPI-2 Protein 2e-98 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT01CX_1298 YP_877381.1 pyruvate kinase VFG0479 Protein 2e-99 51