Gene Information

Name : NT01CX_0327 (NT01CX_0327)
Accession : YP_878825.1
Strain : Clostridium novyi NT
Genome accession: NC_008593
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2011081 - 2011761 bp
Length : 681 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGATAAAAATCACCAATGTTTGTAAATATTACGGTAAAGGTAAGGATAAATTTCAAGCTCTAAGAGATATTAACCTTGA
AATAAAAGAAGGTGAATTTGTCGCTATTATGGGTCCTTCTGGTAGCGGTAAATCTACCTTAATGAATATAATAGGACTTT
TAGATAAAAATTTTGATGGTTCTTATAAGTTAAATGACGTTGAAGTTAAAGATTACAACGATGAAAAACTTTCTCTATAT
AGAAATGAATCCATAGGTTTTGTATTTCAAAGTTTTAATCTACTACCTAGACTTAATGCATTTCGTAATATTGAACTTCC
ACTACTTTATGGTCCTAGAATAAGTAAATCCGAAAGACAGGATAGAGTATTAAAGGCACTAGAAAATGTTGAACTTATAA
GCCATAAAAATAACCTTCCAAAGGAAATGTCAGGAGGGCAAAAACAACGTATAGCCATTGCTAGAGCATTAGTAAACAGA
CCTTCTTTTATACTAGCAGATGAGCCTACTGGTGCTTTAGATTCTAAAACAGGAAAATCTATTATGGAATTGTTTGTAAA
ACTTCACAGTGAAGGTAAAACCATAATTATAGTTACACATGATAAAAATATTGCAAGCTATGCTGATAGATTAATAACTA
TATTAGATGGAACAATTCTTAAAGATGAGGTGTTAAAATGA

Protein sequence : 
MIKITNVCKYYGKGKDKFQALRDINLEIKEGEFVAIMGPSGSGKSTLMNIIGLLDKNFDGSYKLNDVEVKDYNDEKLSLY
RNESIGFVFQSFNLLPRLNAFRNIELPLLYGPRISKSERQDRVLKALENVELISHKNNLPKEMSGGQKQRIAIARALVNR
PSFILADEPTGALDSKTGKSIMELFVKLHSEGKTIIIVTHDKNIASYADRLITILDGTILKDEVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-34 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT01CX_0327 YP_878825.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-55 58
NT01CX_0327 YP_878825.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-38 46
NT01CX_0327 YP_878825.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-42 44
NT01CX_0327 YP_878825.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 3e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT01CX_0327 YP_878825.1 ABC transporter ATP-binding protein VFG0869 Protein 3e-25 41