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Name : lysS (NT01CX_1046) Accession : YP_877136.1 Strain : Clostridium novyi NT Genome accession: NC_008593 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 164518 - 166050 bp Length : 1533 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGGAGAAAAGCAATTGACAAAGGAAGAAATCAAAGCAAGAAAGATGGAAGCCAAAAAAGAAGCAGAATTTAATGCATT AGTAAAAGAAAGAATGCAAAAGCTTGAAAATCTTCAAGAGCAAGGCAAAGATCCTTTTGATGTATACAAAGTAGAAAGAA CTCATACATCACAACAAGTAAAAGACAACTATGATGAATTAGAAGGAAAGAATGTAACTGTAGCTGGTAGACTTATGTCT AAAAGAGTACACGGTAAAGCAGGATTTTCTGATATTCGTGACAGATACGGAAAAATACAATTATATATAAAGATCAATGA TGTTGGAGAAGAAAAACTTAAAGAATATAAGACATTCGATATCGGTGACTTTGTTTCTATTACAGGTACAGTATTTAAGA CTAAAACTGGAGAAATAACTTTACATATTCTTGATTTCCAATTACTAAGCAAATCTTTAAAACCATTACCAGAAAAATTC CATGGCTTAAAAGATCCAGATTTAAGATATAGACAAAGATATGTAGACTTAATAATGAATGAAGACGTAAAAGAAACATT CATGAAGAGAACTGCTATAATAAAAGCTATTAGGGAATTCTTAGACAATAGAGATTTCTTAGAAGTTGAAACTCCAATTT TATCACCAATAGCAGGTGGAGCTGCTGCAAGACCATTCATAACTCACCACAATGCTTTAGATATAGATATGTATCTTAGA ATAGCAACAGAACTTTACCTAAAGAGACTTATTGTAGGTGGATTTGAAAAAGTATATGAAATAGGTAAAAACTTCAGAAA CGAAGGAATAGACGTAAGACACAACCCAGAATTTACAGCAATAGAATTATATGAAGCATATGCTGATTACAATGATATGA TGGAAATTACTGAAAATATGGTTGCTTATGTTTGTGAAAAAGTTAATGGAACAACTAAAGTTATGTACGAAGGTACTGAA ATAGACTTTAAACCACCTTGGAGAAGAATCACAATGGTGGATGCAGTAAAAGAATATGCAGGAGTAGACTTCAATGAAGT TAAAACTGATGAAGAAGCAAGAGAAATTGCAAAATCAAAGGAATTAGAACTTAAAAAAGAACTAAAAGATTGCACAAAAG GTGATATCTTAGTAGCATTATTTGAAGAATTTGGTGAAGAGAAATTAATGCAACCAACATTCGTTTGCGATTATCCAAAG GAAAACTCACCTCTAACTAAAAAGAAAAGAGGAAATGATGAGTTAACAGAAAGATTCGAAGGATTCGTATACGGAAGAGA GATCTGTAATGCTTACTCAGAATTAAATGATCCAATAGTTCAAAAAGAAAGATTCATGCAACAACTTAAAGAAAGAGAAC TTGGTGATGATGAAGCATACATGATGGATGACGATTTCATAAATGCGTTAGAAATAGGTATGCCTCCAACAGGTGGACTT GGAATAGGTATAGATAGATTAATAATGTTCTTAACTGATTCTAGCTCAATCAGAGACGTTATACTATTCCCAACAATGAA ACCAACAAAATAG Protein sequence : MGEKQLTKEEIKARKMEAKKEAEFNALVKERMQKLENLQEQGKDPFDVYKVERTHTSQQVKDNYDELEGKNVTVAGRLMS KRVHGKAGFSDIRDRYGKIQLYIKINDVGEEKLKEYKTFDIGDFVSITGTVFKTKTGEITLHILDFQLLSKSLKPLPEKF HGLKDPDLRYRQRYVDLIMNEDVKETFMKRTAIIKAIREFLDNRDFLEVETPILSPIAGGAAARPFITHHNALDIDMYLR IATELYLKRLIVGGFEKVYEIGKNFRNEGIDVRHNPEFTAIELYEAYADYNDMMEITENMVAYVCEKVNGTTKVMYEGTE IDFKPPWRRITMVDAVKEYAGVDFNEVKTDEEAREIAKSKELELKKELKDCTKGDILVALFEEFGEEKLMQPTFVCDYPK ENSPLTKKKRGNDELTERFEGFVYGREICNAYSELNDPIVQKERFMQQLKERELGDDEAYMMDDDFINALEIGMPPTGGL GIGIDRLIMFLTDSSSIRDVILFPTMKPTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-100 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_877136.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-100 | 47 |
