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Name : NT01CX_1956 (NT01CX_1956) Accession : YP_878029.1 Strain : Clostridium novyi NT Genome accession: NC_008593 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1163582 - 1165129 bp Length : 1548 bp Strand : + Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157 DNA sequence : GTGGAGGCTAAATTGGAAAATAAATTATCATGTTTAAAATTAAAAAATAAAGTACCTTATATAAAAAGTATTTCATTAGA TGATATATACATTTCTAAAGAGGCTTTAAAACTTTTAACTAAAGAAGTAGTTAAAAAGTATGGAGTAATGCCATTTAAAT TAGAATATGATAAGCTACACATTGCTATGATAGACCCATATAATACATCTACTATTGAAGAAATAAGATTCATTACTGGA AGAGAGGTTATACCATACAAAGATACAAAATATAGTATATTTTCAGCCATAGAAGTTTATTATGAAAAAGAAATAGTGGA TGAAGTGCTTAAAGATATAAAAGACATAGGATATACAAGTAAGATTATAAAGGAAAATAATAAAATTATAGAAAATGCTC CAGTAGTAAAGCTTACAAATTCAATAATTAATCAAGCTATCAATAAAAAAGCCAGTGACATTCATTTAGAACCTTTTAAG AATAAAGTTATAGTTAGATTTAGAATTGATGGGGTTTTAAATGAAAGGATGACAATACCAAAAGAAGTATATGTTCTTGT AAATACTAGAATAAAAATAAAATCAGGAATGGATATTTCAAAGAAAATGATACCTCAAGATGGAAAAATGGAATATGAAT TTAGAGATAAAACTTTTAATTTAAGGGTTTCATCAATTCCAACAATAAATGGAGAAAAAATAGTAATAAGAATTTTATAT AAAACCAACAAAAATATAGATATTAATAATTTAATAGAAGATCAGGATGACTTAATATTAATAAAGAAAATACTAAGTCA TCCAAGTGGAATTATTTTAGTAACAGGACCAACAGGCAGTGGGAAAACTACTACTTTATGTTCTATGTTAAATGAGCTTA ATTCTAAAGAGCGAAACATAGTAACAATAGAAGATCCCGTTGAATATGAAATTGAAAGAATAAACCAGATGAATGTAAAT AATAAAGCAGGACTTACATTCTCATCAGCTTTAAGAAGTATTTTAAGGCAAGATCCAGATACGATTATGATCGGTGAAAT TAGAGATGCAGAGACAGCTGATATTTCTGTAAAAGCAGCAATAACTGGGCATTTAGTGTTATCTACACTTCATACAAAAG ATGCGGCAACTACACCAATGAGATTGTGCGATATGAATGTAGAAAATTATCTCATTGCTGATTCATTAGTGGCTGTAATA GCACAAAGATTGGTTAGAAAGATATGTCCATATTGTAAAGAAGAGTATATTTTAAATGATAGAGAAATGGAGTTTTTAAA TATACATAATAAAGAAAAAGTGTATAAGGGAAGAGGATGCAAGTTTTGTAATGGAAGTGGGTACAAAGGCAGAAGAGCTG TTTTTGAAATAATGTACTTAGATGAAACCCATAGAGAACTTATAAGAAAAGGGCAATCTTCTAATAAAATAAGGAACTAT AGTATTAAAAGTGGAATGAAAAGTATTAAAGAAAGTTGTGAAAAATTAGTGTTAAGTGGCGTCACTACAGTTGAAGAAGT TATGAGGGTGTCTTATGGGTATATATAA Protein sequence : MEAKLENKLSCLKLKNKVPYIKSISLDDIYISKEALKLLTKEVVKKYGVMPFKLEYDKLHIAMIDPYNTSTIEEIRFITG REVIPYKDTKYSIFSAIEVYYEKEIVDEVLKDIKDIGYTSKIIKENNKIIENAPVVKLTNSIINQAINKKASDIHLEPFK NKVIVRFRIDGVLNERMTIPKEVYVLVNTRIKIKSGMDISKKMIPQDGKMEYEFRDKTFNLRVSSIPTINGEKIVIRILY KTNKNIDINNLIEDQDDLILIKKILSHPSGIILVTGPTGSGKTTTLCSMLNELNSKERNIVTIEDPVEYEIERINQMNVN NKAGLTFSSALRSILRQDPDTIMIGEIRDAETADISVKAAITGHLVLSTLHTKDAATTPMRLCDMNVENYLIADSLVAVI AQRLVRKICPYCKEEYILNDREMEFLNIHNKEKVYKGRGCKFCNGSGYKGRRAVFEIMYLDETHRELIRKGQSSNKIRNY SIKSGMKSIKESCEKLVLSGVTTVEEVMRVSYGYI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 9e-82 | 43 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-82 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| NT01CX_1956 | YP_878029.1 | general secretion pathway protein E | VFG1876 | Protein | 8e-89 | 47 |
| NT01CX_1956 | YP_878029.1 | general secretion pathway protein E | VFG0182 | Protein | 3e-86 | 46 |
| NT01CX_1956 | YP_878029.1 | general secretion pathway protein E | VFG2048 | Protein | 2e-83 | 44 |
| NT01CX_1956 | YP_878029.1 | general secretion pathway protein E | VFG2426 | Protein | 1e-62 | 42 |
