Gene Information

Name : Shewana3_0299 (Shewana3_0299)
Accession : YP_867948.1
Strain : Shewanella sp. ANA-3
Genome accession: NC_008577
Putative virulence/resistance : Virulence
Product : TonB-dependent siderophore receptor
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1629
EC number : -
Position : 331825 - 334062 bp
Length : 2238 bp
Strand : -
Note : TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eca:ECA0876 TonB-dependent ferric aerobactin receptor

DNA sequence :
ATGCCTAAGTCTATGGGGCCGATAAGCCTAGTCGCCGCCGCAGTTATCTGCCAACTGGGGCTTATTAATGTGGCGACAGC
CGCTGAAAACGAGATGGAGCGCATGGTGGTCTCCGCCACCCGTTCACCTACCCAAATCAGCGATCTATCCAGCACAGTGT
GGATCATTGATGAAGCCAGCATTCGCGAGCAAACCGATAGCGGCAAAGGGATTAAGGAAATGCTCGCCGCCTTAGTGCCG
TCGATGGATGTGTCCAGCCAAGGGCGCACCAACTTTGGCCAGAATATTCGCGGTCGCGCCATGGTGGTATTAATCGATGG
CGTGTCGATGAACACCTCTCGCAGCATCAGCCGTCAGCTAGACAGTATCGATCCATTCAATATTGCGCGCGTCGAGGTAC
TGGCTGGCGCGTCGGCTATCTATGGTGGTGGCGCACTGGGCGGTGCCATTAATATCGTCACTAAAAAAGCGGCTGACAGC
AGTGATACCTTCGAGGCCGAAGCAGGATTTAAGTCCGGCTTTAATAGCAGTGATGATTTAGATTATCGCACCGCGCTGGC
GGTTACCGGGGGCAGTGATTCGCTTAAGGGACGCTTCAGCGCCGCTTGGCAAGAAAACGGCCAGTGGTTTGATGGCAGTG
ACAATCCTGTGATGCTGGATATCTCGCAAACCGGAATGCAGTACACCCAAGGTTATGATTTGATGGCGAATATGGATTGG
CAGCTTGCCAATGACGCCAGCCTCAGCGCCATGGCGCAATACTATCGCAATGGTTCAGACGAAGAACATGGCCTGTATAT
GGGTGAGAACTTCTCCGGTGTCACGGGCGATGCCTCAGTGCTGGAAACCCGTAAAGGATTGGACGCTGACCGCAGCCCCG
CCACCGAGCGTACTTTACTGAATCTGTCCTACTCCCAGGATGAGTTTCTGGGTCAAACCCTGTATTTACAAGGCTTTTAT
CGCAAAGAGAATCTGGATTTCCACCCGTTCCCCTATGTCAATGAAACCAGTGGCGTCTACAACTTCTCTGCATCGGCCCA
AAACACCAGCATCTATGGTTTGAAAGCGGTCGTAGAATCCAAACCCGTCGATAGCCTCACACTCACTTGGGGACTGGATT
GGGATAAAGAAAGTTTTGATTCGAACCAAATGAGCTTCGACCTCAATGCCGCCAACCAACACGGCGGCTTAGTGATGCGC
GAGCTGTTCACTACCGGCCGTTATGTCGACTTTACGGTCGAGTCTATTGCGGCATTTATCCAAAGCAGTTGGGAGATGAA
TAGCTTTTTGGTGCTAAACGCTGGCTATCGTTATCAACACATGGAAAACAGCGTTGATGATTTTATCGGTTATAACCAGC
AGGTGGCGATCGCCTCCGGCAAGGCTAAGGGGGCCGATGCCATTAAAGGCGGCAGCACCGACTATAACATCGGCTTAGTC
AACCTTGGCTTGGTGGCCAAGTTGAGCCAAGACCAACAACTCTGGCTTGCCTATTCCCAAGGCTTTGAGCTGCCAGACCT
GTCGAAATACTATGGCCGCGGCACCTACAAGGCCGATGCCGATGGTTACTTACAGCTGCAAAATAGCATCAATATCAATG
ATACCCGTCTTGACGGGATCAAAACCGACTCCATGGAGCTGGGATGGCGTTATCTTGCAGACCGTTGGCAGGCGCAAGCC
AGCGTCTACTATGCCGTGTCTGACAAGGTCATTGAGGTTAACAGCAAAGATCTGACCATCAATGTCAAAGACCAAGATAA
GCGCAGCTATGGCCTAGAGGCACAGCTTAACTTTGATATCACCTCAGATTGGCAAGTCGGCACCAACCTGCATCTGGTAC
GCAGTGAAGTGAAGGATGAAGATCGCTGGAACGATGAAACCGTCACTTATGCCTCACCCTCTAAGGCCACTGCTTTTATT
GGCTGGCGCGGCGAGACACAGAAGATCCGTTTACAGGCAGAGCACAGTTTTAGCGCCGAATCTGACTATCGCTTCAAAAC
CGACGATGGCCTAGCGAGTGAGCTTGATAGCTACACAACGCTGGATTTACTGGGCTCTATCGATTTACCCGTCGGTACCT
TGAGCTACGGCATCGAAAACCTGCTCGATAAAGACTACAGCACCCTGTGGGGCCAAAGAGCTGTGTACTTCTACAGCCCA
ACCTACGGCCCTGAGTCTATGTTCGACTACCACGGCCGTGGCCGCACCTTTGCCCTCAATTATCAACTGAGTTGGTGA

Protein sequence :
MPKSMGPISLVAAAVICQLGLINVATAAENEMERMVVSATRSPTQISDLSSTVWIIDEASIREQTDSGKGIKEMLAALVP
SMDVSSQGRTNFGQNIRGRAMVVLIDGVSMNTSRSISRQLDSIDPFNIARVEVLAGASAIYGGGALGGAINIVTKKAADS
SDTFEAEAGFKSGFNSSDDLDYRTALAVTGGSDSLKGRFSAAWQENGQWFDGSDNPVMLDISQTGMQYTQGYDLMANMDW
QLANDASLSAMAQYYRNGSDEEHGLYMGENFSGVTGDASVLETRKGLDADRSPATERTLLNLSYSQDEFLGQTLYLQGFY
RKENLDFHPFPYVNETSGVYNFSASAQNTSIYGLKAVVESKPVDSLTLTWGLDWDKESFDSNQMSFDLNAANQHGGLVMR
ELFTTGRYVDFTVESIAAFIQSSWEMNSFLVLNAGYRYQHMENSVDDFIGYNQQVAIASGKAKGADAIKGGSTDYNIGLV
NLGLVAKLSQDQQLWLAYSQGFELPDLSKYYGRGTYKADADGYLQLQNSININDTRLDGIKTDSMELGWRYLADRWQAQA
SVYYAVSDKVIEVNSKDLTINVKDQDKRSYGLEAQLNFDITSDWQVGTNLHLVRSEVKDEDRWNDETVTYASPSKATAFI
GWRGETQKIRLQAEHSFSAESDYRFKTDDGLASELDSYTTLDLLGSIDLPVGTLSYGIENLLDKDYSTLWGQRAVYFYSP
TYGPESMFDYHGRGRTFALNYQLSW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iutA NP_839219.1 ferric siderophore receptor Virulence SHI-2 Protein 4e-153 47
iutA NP_709458.2 ferric siderophore receptor Virulence SHI-2 Protein 4e-153 47
iutA AAD44750.1 IutA Virulence SHI-2 Protein 9e-152 47
iutA AAK71635.1 IutA Virulence SHI-3 Protein 4e-152 47
iutA YP_002414042.1 Ferric aerobactin receptor Virulence Not named Protein 4e-152 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewana3_0299 YP_867948.1 TonB-dependent siderophore receptor VFG0619 Protein 2e-153 47
Shewana3_0299 YP_867948.1 TonB-dependent siderophore receptor VFG1085 Protein 2e-152 47
Shewana3_0299 YP_867948.1 TonB-dependent siderophore receptor VFG0936 Protein 2e-152 47