Gene Information

Name : Shewana3_2643 (Shewana3_2643)
Accession : YP_870276.1
Strain : Shewanella sp. ANA-3
Genome accession: NC_008577
Putative virulence/resistance : Resistance
Product : methionine gamma-lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 3156336 - 3157529 bp
Length : 1194 bp
Strand : -
Note : TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO1812 methionine gamma-lyase

DNA sequence :
ATGCAAGATGAATCAAGCAAGCAGTGGAAAGCCGCGACCCAAGCTATTCATGCCGGGCATGAGCGAGAAGCTTTTGGTAC
TTTGGTGACGCCACTTTATCAAACGGCGACTTTTGTTTTTGAGTCGGCGCAGCAAGGCGGCGAGCGATTTGCCGGCAACG
AACCCGGTTATATTTATACTCGCCTAGGTAACCCGACCGTTGCCGAGCTGGAACGTAAAATGGCGATTTTAGAAGGCGCT
GAAGCGGCGGCAGCAACGGCCTCTGGCATGGGTGCTGTGTCGGCGGCGCTGCTGGCTAACTTGCAGATGGGCGATCATTT
AGTGGCTTCCAATGCGGTTTATGGTTGCACCTTTGCCCTTATGACTAGCCAATTTGCCCGCTTCGGTATCGAAGTCACCT
TAGTCGATTTTACCGATTTAGCGGCCATTGAACGGGCTATCAAACCCAACACTCGGGTGATTTTTTGCGAAACTCCGGTT
AATCCTCATTTACAGGTGTTTGATCTCAAAGGTATCGCCGATATTGCGAAACGGCATCAACTTGTCAGCATTGTCGATAA
TACTTTTATGACACCGTTACTGCAGCAACCCTTAGCATTCGGTATCGATTTAGTGGTACACAGTGCGACTAAGTATTTGA
ATGGGCACGGCGATGTAATTGCTGGCGTCGTGTGTGGCAGTGAAGAGCAGCTGCACAGAGTGAAATATGAGATTCTAAAG
GATATCGGTGCTGTGATGTCTCCCCACGATGCGTGGCTGATTTTGCGAGGGCTAAAAACCTTAGATGTGCGTTTGCAGCG
CCATTGTGACAGTGCGCAGCGTGTCGCCGAGTTTTTGGAGCAACATCCCGCAGTGACTCGGGTGTATTATCCCGGGCTTA
AATCCCATTCAGGGCATCGATTTATCGGTGGACAGATGGCGAAAGCTGGTGGCGTGATTGCCTTTGAGTTAGCCGCCTCT
CTTGAGCAAGCGATGGCTTTTGTGGGTTACCTTAAGCTGTTTTCAATCGCTGTAAGTTTGGGGGATGCGGAATCCCTTAT
TCAGCACCCAGCTTCCATGACCCACTCACCCTACACGCCAGAGGCACGCCAGGCAGCGGGAATAAGCGATAATTTACTGC
GCATCTCAATCGGTTTAGAGGATTGCGGCGATATCATCGAGGATTTAAACCAAGCTTTGGCGATGCTGGCGTAA

Protein sequence :
MQDESSKQWKAATQAIHAGHEREAFGTLVTPLYQTATFVFESAQQGGERFAGNEPGYIYTRLGNPTVAELERKMAILEGA
EAAAATASGMGAVSAALLANLQMGDHLVASNAVYGCTFALMTSQFARFGIEVTLVDFTDLAAIERAIKPNTRVIFCETPV
NPHLQVFDLKGIADIAKRHQLVSIVDNTFMTPLLQQPLAFGIDLVVHSATKYLNGHGDVIAGVVCGSEEQLHRVKYEILK
DIGAVMSPHDAWLILRGLKTLDVRLQRHCDSAQRVAEFLEQHPAVTRVYYPGLKSHSGHRFIGGQMAKAGGVIAFELAAS
LEQAMAFVGYLKLFSIAVSLGDAESLIQHPASMTHSPYTPEARQAAGISDNLLRISIGLEDCGDIIEDLNQALAMLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 1e-64 43
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 1e-56 43
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 2e-63 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewana3_2643 YP_870276.1 methionine gamma-lyase BAC0207 Protein 7e-82 52