Gene Information

Name : Mmc1_0097 (Mmc1_0097)
Accession : YP_864032.1
Strain : Magnetococcus marinus MC-1
Genome accession: NC_008576
Putative virulence/resistance : Virulence
Product : sigma-54 dependent trancsriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG3829
EC number : -
Position : 101607 - 102569 bp
Length : 963 bp
Strand : +
Note : PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: ATPase AAA; KEGG: mca:MCA1096 sigma-54-dependent transcriptional regulator

DNA sequence : 
ATGACCCCTCACGACCCCAAACAGGAGATTCTAACCCGTACCCCGGAGATGGAATCTGTCATGCGTGCCGCTACCCTCGT
GGCCCAAACCAATGTAACCGTGCTCATAACCGGCGAAAGCGGTACCGGCAAAGAGCGCATCGGACACCTGGTGCACGCAG
AAAGTCGCCGAAATAAAGGTCCCTGGGTTCCCGTTAACTGCGCCGCCCTGCAAGATAACCTCGCCGAATCAGAACTGTTT
GGCCACGTGCGCGGCGCCTTCACCGGCGCAACCGATGCCCACCAAGGGCGCGTTCGCGCCTCCTCCGGTGGGACACTGTT
TCTCGACGAAGTGGGTGAATTAAGCCTGCCACTACAGGCAAAACTCCTACGTCTGCTTGAAAATAGTGAATGCCAAGTGG
TCGGACAAGCGCAACCTGTGCGGGTGGATATCCGTATCGTCGCCGCCACCAATGTGGACCTCGCACAGCGGGTGCGCGAG
GGTCTGTTTCGTGAAGATCTCTTCTACCGCCTCAATATCGCACCCTTAACCCTGCCCCCCCTAAGGGACCGTCCCCGCGA
TATTCCCCTGCTCATGGATCACTTTTTACTGGAAGCCGCAGCCCGCTTTGAACGTAAACCGCCACGCTTTACCAGTAAAG
CGCTCCAGCAAATCCAAAACCACCGCTGGCCCGGGAATATCCGCGAACTGCTCAATTTTTGTACGCGTATGGTCATCTAT
CACGGCGGCGAAGAGGTTGACCTGCCCGCACTGCCCGTCGAGCTGCGGGGTACGGTGCCCGAGGTCGCCTCCGGATCCCC
CTTCGACCTGCCCTCACAAGGGGTGGACCTAACCGCCGTGGAGCGTGGCCTCATCAAGCAGGCGCTGGAACGCGCGACAG
GTAATAAATCCAAGGCCGCACGCCTGTTGGGCTTAACCCGCGATACCCTGCTCTATCGCCTAAAAAAACATACCCTCGAC
TAA

Protein sequence : 
MTPHDPKQEILTRTPEMESVMRAATLVAQTNVTVLITGESGTGKERIGHLVHAESRRNKGPWVPVNCAALQDNLAESELF
GHVRGAFTGATDAHQGRVRASSGGTLFLDEVGELSLPLQAKLLRLLENSECQVVGQAQPVRVDIRIVAATNVDLAQRVRE
GLFREDLFYRLNIAPLTLPPLRDRPRDIPLLMDHFLLEAAARFERKPPRFTSKALQQIQNHRWPGNIRELLNFCTRMVIY
HGGEEVDLPALPVELRGTVPEVASGSPFDLPSQGVDLTAVERGLIKQALERATGNKSKAARLLGLTRDTLLYRLKKHTLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR NP_791206.1 type III transcriptional regulator HrpR Virulence Hrp PAI Protein 2e-35 42
hrpR AAC34752.1 HrpR Virulence Hrp PAI Protein 2e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mmc1_0097 YP_864032.1 sigma-54 dependent trancsriptional regulator BAC0467 Protein 6e-51 46