Gene Information

Name : Mmc1_1989 (Mmc1_1989)
Accession : YP_865897.1
Strain : Magnetococcus marinus MC-1
Genome accession: NC_008576
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2466644 - 2467513 bp
Length : 870 bp
Strand : +
Note : PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein

DNA sequence : 
GTGAGGTACGCCTTTATTCAAGCTCATAGCAAAAGCTACTCTGTCGAGTCTTTATGCCGTGTTCTGGATGTTTCTCGTAG
TGGATTTTATGGCTGGCTTAATCGAACCAGTACGAGTAAGGCTGAAGAGAATCAACTGCTTGAAGAGTGGATAGCAGAGA
TTTTCAAGGTGAGTCGATCAACCTATGGAACACGGCGTATACGCAAAGCGTTAAATGAGCATGGTGTACGAGTGAGTCGC
CGACGCGTCTCCAGAATCAAGAGGAAGCTTGGCTTGGTTTGTAAAGCTCAGAAGCGTTATAAGGTTGTAACGACAGATTC
AAATCACGCACTGCCTATAGCGCCTAACCTTCTTGATCGTCAATTCGATACGGAACGCCCTGATAACGCCTATGTTGGTG
ACATCACATATATTCCGACCAAGGAAGGTTGGCTTTATCTGGCTGTTTGGATTGACCTTTATTCCAGAGCTGTTGTCGGT
TGGTCTATGGCAGACCATATGAAAGCAGAACTGGTAACAGACGCTTTACGCATGGCCTTTTTCAAGCGCCGCCCAGAGGC
CGGGCTGATTGTTCATAGTGATCGTGGTAGCCAATATGCATCTGAACTCTTGAGAAAATATCTGGATGAAAGAGGCTATA
CACAGAGTATGAGTCGCCGTGGTAACTGTTGGGACAACGCACCAGCAGAAAGCTTTTTCCACACTCTCAAAGTTGAACTG
GTTTCATCCTGTGACTTTAAGACACGCGATGAGGCTAAACAGATCATCTTTGAATATATAGAGGTCTTTTATAACCGAAA
GCGCAAGCACTCATCCATCGGCTATATGAGTCCTTCTCAGTACGAAATAGAGTGGTTCAAGTCCGCGTAA

Protein sequence : 
MRYAFIQAHSKSYSVESLCRVLDVSRSGFYGWLNRTSTSKAEENQLLEEWIAEIFKVSRSTYGTRRIRKALNEHGVRVSR
RRVSRIKRKLGLVCKAQKRYKVVTTDSNHALPIAPNLLDRQFDTERPDNAYVGDITYIPTKEGWLYLAVWIDLYSRAVVG
WSMADHMKAELVTDALRMAFFKRRPEAGLIVHSDRGSQYASELLRKYLDERGYTQSMSRRGNCWDNAPAESFFHTLKVEL
VSSCDFKTRDEAKQIIFEYIEVFYNRKRKHSSIGYMSPSQYEIEWFKSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 3e-50 47
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-50 47
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-50 47
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-50 47
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-50 46
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-50 46
unnamed AAF09022.1 unknown Not tested SHI-O Protein 1e-50 46
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-50 46
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 3e-50 46
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 8e-36 43
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-35 43
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 3e-47 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 9e-48 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-47 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 7e-47 42
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 3e-43 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-43 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-43 41
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 9e-29 41
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 2e-28 41
unnamed CAI43898.1 putative transposase Not tested LEE Protein 2e-29 41
Z5089 NP_290241.1 transposase Not tested LEE Protein 3e-28 41
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 2e-29 41
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 6e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mmc1_1989 YP_865897.1 integrase catalytic subunit VFG1706 Protein 1e-50 47
Mmc1_1989 YP_865897.1 integrase catalytic subunit VFG1631 Protein 2e-47 42
Mmc1_1989 YP_865897.1 integrase catalytic subunit VFG0785 Protein 1e-28 41