Gene Information

Name : Mmc1_1980 (Mmc1_1980)
Accession : YP_865888.1
Strain : Magnetococcus marinus MC-1
Genome accession: NC_008576
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2457511 - 2458320 bp
Length : 810 bp
Strand : -
Note : PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein

DNA sequence :
GTGTGCGTACTTCGCGAGATCCCTTCCGTGAGGTACGCCTTTATTCAAGCTCATAGCAAAAGCTACTCTGTCGAGTCTTT
ATGCCGTGTTCTGGATGTTTCTCGTAGTGGATTTTATGGCTGGCTTAATCGAACCAGTACGAGTAAGGCTGAAGAGAATC
AACTGCTTGAAGAGTGGATAGCAGAGATTTTCAAGGTGAGTCGATCAACCTATGGAACACGGCGTATACGCAAAGCGTTA
AATGAGCATGGTGTACGAGTGAGTCGCCGACGCGTCTCCAGAATCAAGAGGAAGCTTGGCTTGGTTTGTAAAGCTCAGAA
GCGTTATAAGGTTGTAACGACAGATTCAAATCACGCACTGCCTATAGCGCCTAACCTTCTTGATCGTCAATTCGATACGG
AACGCCCTGATAACGCCTATGTTGGTGACATCACATATATTCCGACCAAGGAAGGTTGGCTTTATCTGGCTGTTTGGATT
GACCTTTATTCCAGAGCTGTTGTCGGTTGGTCTATGGCAGACCATATGAAAGCAGAACTGGTAACAGACGCTTTACGCAT
GGCCTTTTTCAAGCGCCGCCCAGAGGCCGGGCTGATTGTTCATAGTGATCGTGGTAGCCAATATGCATCTGAACTCTTGA
GAAAATATCTGGATGAAAGAGGCTATACACAGAGTATGAGTCGCCGTGGTAACTGTTGGGACAACGGTGTGCCACGAACT
CCTTATAGGAGGTGCTTCATAAAAGATGAGAGTGTGGCCTCTCGGAATCGGGTTGCAGGACCGGGTTTCAAACAGCGTCG
AGCTGCTTAG

Protein sequence :
MCVLREIPSVRYAFIQAHSKSYSVESLCRVLDVSRSGFYGWLNRTSTSKAEENQLLEEWIAEIFKVSRSTYGTRRIRKAL
NEHGVRVSRRRVSRIKRKLGLVCKAQKRYKVVTTDSNHALPIAPNLLDRQFDTERPDNAYVGDITYIPTKEGWLYLAVWI
DLYSRAVVGWSMADHMKAELVTDALRMAFFKRRPEAGLIVHSDRGSQYASELLRKYLDERGYTQSMSRRGNCWDNGVPRT
PYRRCFIKDESVASRNRVAGPGFKQRRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 9e-37 44
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-37 44
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 8e-37 44
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 8e-37 44
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 8e-37 44
unnamed AAF09030.1 unknown Not tested SHI-O Protein 8e-37 44
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 8e-37 44
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 6e-37 44
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 4e-37 44
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 2e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mmc1_1980 YP_865888.1 integrase catalytic subunit VFG1706 Protein 4e-37 44