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Name : Shewana3_4244 (Shewana3_4244) Accession : YP_863759.1 Strain : Genome accession: NC_008573 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 117132 - 120386 bp Length : 3255 bp Strand : + Note : KEGG: mma:MM0431 type I restriction-modification system restriction subnit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase dom DNA sequence : ATGATCACAGAAGACCAACTAGAGCAGCTCTGCCTTGACTGGTTTACAGACCAAGGTTATCTATACAAAAATGGCTACGA CATCGCCCCTGATGGCGATTCACCAGAGCGTGATGATTACCACCAAGTCGTGCTGAAGCAGCGCTTGCTTGAGCGTTTAG AGGTATTAAACCCTGAACTACCACAAGAGAGCTTGGATGTGGTGGTGAATACGGTAAGTACGCCAGACACGCCAGTACTG ATTAAAAGCAACCGCGGTTTCCACAAATACCTGATTGAAGGTGTACCTGTTGAGTACACCGTGTATGAAGACGGGGAAAC GAAAACCAAGCACACCCACGCACGCTTAATGGATTTTACCAATCCAGATAACAACGAGTTTCTGGTGGTGAATCAGTTCA CCATTACAGGAAAAAAAGGCAACCGTCGCCCTGATGTAGTGGTGTTCATTAATGGTTTGCCGATTGCGGTTATCGAGCTG AAAAACCCAGCCGACGAACATGCGGACATTTGGCATGCTTACAACCAACTGCAAACCTACAAAGATGAAATTCCTGATCT GTTTGTTTTCAACGAATCTTTGGTGGTGAGTGATGGTTGGACGGCGCGTGTTGGCTCTCTCACCGCAAACAAAGAACGTT TTTTACCATGGAAAACTGTTTCTGGTGAAGACGATAAACCGCTCTGGGATTATCAGCTTGAAACCATGGTTAAGGGTTTC TTCAAGCCTGATTTACTGCTTGATTACATTCGTTACTTTGTCTTGTTTGAAACTGACAACGACACTGTCATCAAGAAAAT TGCTGGTTACCACCAGTTCCATGCCGTGCGAGCGGCAGTCGAAGCCACAGTGCGAGCGAAACAGGCCGATGGCGAACTGC CTTTAGTCGCTGAAAGCATGGGGCAATACCAAGTTCAAGCGACAAAAGGCTTAGATAAAATCAAGCCCGGAAGTGGTAAA GCGGGTGTGGTTTGGCATACGCAAGGCAGTGGTAAAAGTATCTCTATGGTTTGCTACGCAAGCAAACTATTGCAACAGCC TGCGATGAACAACCCAACGATTGTGGTGGTGACAGACCGTAATGATCTTGATGGTCAGCTTTTTAATACCTTTGGTATGG CGCATGAAACGCTTAAACAAGTGCCATCGCAAGCGGACGGGCGTGATAAGCTGCGTGAGCTGCTGCTCTCTCGTCAATCT GGCGGCATCATCTTTACCACCATTCAAAAATTTGCCCTACTTGCTGAAGAAACAGAGCACCCAGTGTTATCAACGCGTGC CAACATCGTTGTGGTATCGGATGAAGCGCACCGCAGTCAGTACGGTAACAAATCAAAGTTAGTGGACGTTAAAGACGCTA ATGGCAATGTCATCTCACAAAAGTTTGTTTATGGTTACTCCAAATACATGCGTGATGCGCTGCCAAATGCATCGTTCATT GGCTTTACGGGAACACCCATTGCCATGGACGACAAAGACACTCGTGGCGTATTTGGTGAGTACGTTTCTATCTATGATAT TCAAGATGCGGTCGATGATGGTGCTACGGTGCCAATCTACTATGAGTCTCGCTTAGCCAAGCTTGATATCAACCAAGCTG AAATCGAGCAGCTTAATGACCAAATCGAAGATGAGATCGGTGAGGATGAAGAGACTGCGAGCCGTGAGAAAATCAAATCT CAATGGGCAACGCTTGAAAAGCTCGTCGGTGCTGAGCCACGTATCCAACAAGTAGCTCAGGACTTAGTGAATCACTTTAC CACGCGTACCGAAACGTTTCCCGGCAAAGCCATGATTGTGGCGATGAGTCGTGAAATCTGTGTCGATCTCTACAATGCGA TTGTTGCTATCAAGCCAGAGTGGCACAACGATGACCCTGCTAAAGGGGCTATCAAGATAGTCATGACAGGAAGCGCATCT GATAAACCTAAGATGCAGCCGCACATCCATGATAAGAAAACCAAGAAGCTCTTTGAGGCGCGATATAAAGATACTCAAGA TGAACTTCAATTGGTGATTGTTCGTGATATGTGGCTAACAGGCTTTGATGCGCCGTGTTGCCATACCATGTATGTCGATA AGCCAATGAAAGGTCACAACCTGATGCAGGCTATCGCACGCGTAAACCGCGTTTTTAAAGACAAACCGGGCGGTCTGGTG GTTGACTATATCGGCATTGCTAATGAGCTTAAAAACGCACTCAAAACCTACACCAATAGCCAAGGTAAAGGGCAACCAAC CGTCGATACTGCTGAAGCCTTTTCGGTACTGATGGAAAAGGTTGATATCGTTCGTGGCATGTTTGCGACTCCAGTTGATG GCAAGGTTTTTAACTATCGTCCTGACTTTGAAACTGATGCGCTGCGTTTACTGCCCGGTGCGGTAAACCATCTATCAGGT TTGTCACACACAGATAGCAAAGGCAAAGAAGTACGCGATGGCAAACGTCGATTCCTCGATGTGATGGCTGCGTTAGGTAA AGCGTATTCATTGTGTAATACCATGGATGAAACGCGTGGTTACAAGAACGAAATTGCCTTCTACTCTGCGATTAAAGCCG CGTTTATGAAGCACTCTACCGTTGATAAAAAGCGTACGGATGAAGAGCGCAATACGGCTTTGAAGCAGATCCTCGACAAT GCTGTGATCGCTGATGGTGTTGATGATATTTTCTCAATGGTTGGTTTAGATAAGCCTAACATCGGTTTGCTTTCTGAAGA GTTCTTAGAAGACGTTAAGAACATGAAAGAAAAGAACCTTGCTGTTGAGCTGCTTGAGAAGCTGCTGCGTGATGAAGTCA AAGCTCGGATGAAGAACGATGTGGTGCAAGAGAAAAAATACTCAGACCGCATTTTGACGACATTAAACAAGTACCACAAC CGTAGCATCGAAACAGCTCAGGTCATTGAAGAGCTAATTCAATGGGCAAAAGAGATGCAAGAAGATGCGGAGATGGTAGA TAAGCTCAACCTTTCTGTGGATGAGATGGCGTTCTACCGTGCTTTGGTTGAAAACGAGTCCTCAGTTCGGGAGCTTGGCA ACGATGATTTACGCAACTTAGCGATTGAACTTACTCAGCAACTTCGTAAATCTGCAACGGTTGACTGGCAAAAGCGCGAA AGCGTTCGCGCTCGTATGCGTAACCTAGTACGCCGACTGCTGCGTCGATGGAAATATCCACCTGATTCCGCAGAGGAAGC CATCAAGCTTGTGTTAGAACAAGCAGAGGTTCTAGCTGACGGCTGGTATAAGTAA Protein sequence : MITEDQLEQLCLDWFTDQGYLYKNGYDIAPDGDSPERDDYHQVVLKQRLLERLEVLNPELPQESLDVVVNTVSTPDTPVL IKSNRGFHKYLIEGVPVEYTVYEDGETKTKHTHARLMDFTNPDNNEFLVVNQFTITGKKGNRRPDVVVFINGLPIAVIEL KNPADEHADIWHAYNQLQTYKDEIPDLFVFNESLVVSDGWTARVGSLTANKERFLPWKTVSGEDDKPLWDYQLETMVKGF FKPDLLLDYIRYFVLFETDNDTVIKKIAGYHQFHAVRAAVEATVRAKQADGELPLVAESMGQYQVQATKGLDKIKPGSGK AGVVWHTQGSGKSISMVCYASKLLQQPAMNNPTIVVVTDRNDLDGQLFNTFGMAHETLKQVPSQADGRDKLRELLLSRQS GGIIFTTIQKFALLAEETEHPVLSTRANIVVVSDEAHRSQYGNKSKLVDVKDANGNVISQKFVYGYSKYMRDALPNASFI GFTGTPIAMDDKDTRGVFGEYVSIYDIQDAVDDGATVPIYYESRLAKLDINQAEIEQLNDQIEDEIGEDEETASREKIKS QWATLEKLVGAEPRIQQVAQDLVNHFTTRTETFPGKAMIVAMSREICVDLYNAIVAIKPEWHNDDPAKGAIKIVMTGSAS DKPKMQPHIHDKKTKKLFEARYKDTQDELQLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLV VDYIGIANELKNALKTYTNSQGKGQPTVDTAEAFSVLMEKVDIVRGMFATPVDGKVFNYRPDFETDALRLLPGAVNHLSG LSHTDSKGKEVRDGKRRFLDVMAALGKAYSLCNTMDETRGYKNEIAFYSAIKAAFMKHSTVDKKRTDEERNTALKQILDN AVIADGVDDIFSMVGLDKPNIGLLSEEFLEDVKNMKEKNLAVELLEKLLRDEVKARMKNDVVQEKKYSDRILTTLNKYHN RSIETAQVIEELIQWAKEMQEDAEMVDKLNLSVDEMAFYRALVENESSVRELGNDDLRNLAIELTQQLRKSATVDWQKRE SVRARMRNLVRRLLRRWKYPPDSAEEAIKLVLEQAEVLADGWYK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 61 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 45 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 45 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 45 |
