Gene Information

Name : GFO_1502 (GFO_1502)
Accession : YP_861542.1
Strain : Gramella forsetii KT0803
Genome accession: NC_008571
Putative virulence/resistance : Virulence
Product : ClpA/ClpB family chaperone
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1552985 - 1555537 bp
Length : 2553 bp
Strand : -
Note : -

DNA sequence :
ATGGATGATAATTTTTCACCAAGAGTAAAAGATGTTATTGCTTACAGTAAAGAGGAAGCACTAAGACTTGGCCACGATTT
TATCGGGACAGAGCATCTTATGCTTGGTTTACTGAGAGATGGAGATGGTAAAGCTATAGAAATACTAAGTGCACTTGATA
TAGACTTAAGTCATTTAAGACGTAAAGTAGAAATTCTAAGCCCTGCTAATCCCAATACCGTTACTATAAATAACGAGAAG
AAAAACCTGCATTTAACAAGACAGGCTGAACGTGCTTTAAAAACAACATTTCTGGAAGCTAAACTTTTCCAGAGTTCGTC
AATAAATACCGCTCACCTTTTGTTGTGCATTTTAAGAAATGAAAATGACCCGACAACTAAACTCCTGAATAAATTGAAAA
TAGACTACGACGGTGTAAAAGATCAATTTAAATACATGATCGCAAGTGATGAAGGTGATTTTACTGATAGCCCTTCTGCG
GAATCATTTTCAGATGATGATGGTGACGAAACAACTAGAGAAAACCCCTTTAGTGGTGGTGGAACTACTGGTAAACCTTC
TAAAAAATCCAAAACTCCTGTTTTAGATAATTTTGGTAGAGATCTTACTGCACTAGCCGAAGCCGATAAACTGGATCCTG
TAGTTGGAAGAGAAAAAGAAATTGAACGGGTTTCGCAAATATTAAGTAGAAGAAAAAAGAATAACCCTCTTTTAATTGGA
GAGCCGGGAGTTGGTAAATCTGCAATAGCAGAAGGACTTGCGCTTAGAATTGTAAAACGTAAAGTCTCCAGGATCCTATT
CGACAAAAGAGTTGTTACTCTTGATTTGGCAAGCCTTGTTGCAGGTACCAAATATCGAGGTCAATTTGAAGAACGTATAA
AGGCTGTTATGAATGAGCTTGAAAAGAATGATGATATCATCCTTTTTATAGACGAAATTCATACAATTGTAGGTGCAGGT
GGCGCTACAGGAAGTCTTGATGCCAGCAACATGTTTAAACCGGCTTTAGCAAGGGGTGAGATTCAATGTATAGGAGCTAC
TACTCTGGATGAGTATAGACAATACATAGAAAAAGATGGTGCGTTAGAAAGAAGGTTCCAGAAAGTTATCGTGGAGCCTA
CCACTGTAGAAGAAACTATTGAGATTCTTAACAATATTAAGGATAAATATGAAGAACATCATAACGTATCTTATACAGAT
GAAGCGATTCAGGCCTGTGTAAAACTTACTAACAGATACATGACAGATAGATTTCTTCCAGATAAAGCTATTGATGCCTT
AGATGAAGCGGGATCTAGAGTTCATATCATAAACATTGATGTTCCAAAACAAATTCTTGAACTAGAAAGGAAACTTGAAG
AAGTTCGGGATAGTAAGAATTCAGTGGTCAAGAAGCAGAAATATGAAGAGGCTGCAAAGCTGAGAGATGATGAAAAGAAC
CTTGAAAAAGAACTTAGCATTGCTCAGGAAAAATGGGAAGAAGAAACAAAGAAGCATAAAGAAACAGTTTCAGAAGAAAG
TGTAGCTGATGTGGTTTCCATGATGACAGGAATTCCTGTTAATAGAATCGCCCAAACTGAAAGTAACAAACTGGTGAAGC
TTCCTACAAAGATCAAAGGAAAAGTGATTGGTCAGGATGAAGCCGTTGGGAAAGTTGTAAAGGCTATTCAACGTAATCGT
GCAGGACTAAAAGATCCAAACAAGCCGATTGGTTCCTTTATTTTCCTCGGTCAAACCGGTGTTGGAAAAACCCAGTTAGC
TAAAGTTTTAGCCAGGGAATTATTTGATAATGATGATGCGCTTATTCGTATAGACATGAGTGAGTATATGGAGAAATTTG
CAATCTCCAGGTTAATTGGTGCTCCTCCGGGATATGTTGGATACGAAGAAGGTGGTCAACTTACTGAAAAAGTTAGAAGG
AAGCCTTATGCCGTTGTTCTTTTAGATGAAGTTGAAAAAGCACACCCTGATGTTTTTAATATGCTACTTCAGGTACTTGA
TGATGGATATTTAACTGACAGTCTAGGAAGAAAGATTGACTTTAGAAATACTATAATTATCATGACCTCTAATATCGGAG
CCAGAAAATTAAAAGATTTTGGACAGGGTGTTGGATTTGGTACAGCTTCTCAAAAATCACAGGTAGATAATAATGCTAGA
AGTGTAATTGAAAATGCATTGAAAAAAGCGTTCGCTCCAGAATTTTTAAACCGTATTGACGATGTAGTCATCTTTAATAG
CCTGGAAAGGGAAGATATTCATAAGATCATAGATATTGAACTGGAAAAACTGTTTGATAGAATTCATGGTCTTGGTTACG
ATTTAACTCTTTCAGATAAGGCTAAAGATTTTATTGCTGAAAAAGGTTTCGATAAACAGTATGGTGCACGTCCTTTAAAT
CGTGCGATACAGAAGTATATTGAAGATGCCTTAGCTGAAGAAATTATCACCTCTAAATTGAAAGAAGGCGATAAGATTCA
AATGGATCTGGATGAAGAAAAGAATGAATTAACAATTGATATTCAAAAATCTGTAAAAGAAACCGAATCTTAA

Protein sequence :
MDDNFSPRVKDVIAYSKEEALRLGHDFIGTEHLMLGLLRDGDGKAIEILSALDIDLSHLRRKVEILSPANPNTVTINNEK
KNLHLTRQAERALKTTFLEAKLFQSSSINTAHLLLCILRNENDPTTKLLNKLKIDYDGVKDQFKYMIASDEGDFTDSPSA
ESFSDDDGDETTRENPFSGGGTTGKPSKKSKTPVLDNFGRDLTALAEADKLDPVVGREKEIERVSQILSRRKKNNPLLIG
EPGVGKSAIAEGLALRIVKRKVSRILFDKRVVTLDLASLVAGTKYRGQFEERIKAVMNELEKNDDIILFIDEIHTIVGAG
GATGSLDASNMFKPALARGEIQCIGATTLDEYRQYIEKDGALERRFQKVIVEPTTVEETIEILNNIKDKYEEHHNVSYTD
EAIQACVKLTNRYMTDRFLPDKAIDALDEAGSRVHIINIDVPKQILELERKLEEVRDSKNSVVKKQKYEEAAKLRDDEKN
LEKELSIAQEKWEEETKKHKETVSEESVADVVSMMTGIPVNRIAQTESNKLVKLPTKIKGKVIGQDEAVGKVVKAIQRNR
AGLKDPNKPIGSFIFLGQTGVGKTQLAKVLARELFDNDDALIRIDMSEYMEKFAISRLIGAPPGYVGYEEGGQLTEKVRR
KPYAVVLLDEVEKAHPDVFNMLLQVLDDGYLTDSLGRKIDFRNTIIIMTSNIGARKLKDFGQGVGFGTASQKSQVDNNAR
SVIENALKKAFAPEFLNRIDDVVIFNSLEREDIHKIIDIELEKLFDRIHGLGYDLTLSDKAKDFIAEKGFDKQYGARPLN
RAIQKYIEDALAEEIITSKLKEGDKIQMDLDEEKNELTIDIQKSVKETES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 6e-172 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GFO_1502 YP_861542.1 ClpA/ClpB family chaperone VFG0079 Protein 0.0 49
GFO_1502 YP_861542.1 ClpA/ClpB family chaperone VFG0080 Protein 6e-146 47