|
Name : gspD (AHA_0569) Accession : YP_855102.1 Strain : Aeromonas hydrophila ATCC 7966 Genome accession: NC_008570 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 603731 - 605764 bp Length : 2034 bp Strand : + Note : identified by similarity to SP:P45758; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 DNA sequence : ATGATAAATAAAGGGAAGGGCTGGCGTCTGGCCACCGTGGCTGCGGCGCTGATGATGGCAGGTTCTGCCTGGGCCACCGA ATATTCCGCCAGCTTCAAGAATGCCGACATCGAAGAGTTCATCAACACGGTCGGCAAGAACCTGAACAAGACCATCATCA TCGAGCCTTCGGTGCGCGGCAAGATCAACGTCCGCAGCTATGACCTGCTCAACGAAGACCAGTACTACCAGTTCTTCCTG AGCGTGCTCGATGTCTATGGCTTCGCCGTGGTCCCGATGGACAACGGCGTGCTCAAGGTGGTGCGCTCCAAGGATGCCAA GACCTCCGCCATCCCGGTGGTGGACGAGAGCAACCCCGGCAGTGGCGACGAGATGGTGACCCGGGTGGTACCGGTGCGCA ACGTTTCGGTGCGCGAACTGGCGCCGCTGCTGCGCCAGCTCAACGACAACGCCGGCGGCGGCAACGTGGTCCATTACGAC CCCTCCAACGTGCTGCTGATCACCGGCCGCGCCGCCGTGGTCAATCGGCTGGTGGAAGTGGTGCGCCGGGTCGACAAGGC GGGCGACCAGGAAGTGGACATCGTCAAGCTCAAGTACGCCTCTGCCGGCGAGATGGTGCGGCTGGTGACCAACCTCAACA AGGATGGCAACAACCAGGGCGGCAACACCTCCCTGCTGCTGGCCCCCAAGGTGGTGGCCGACGAGCGCACCAACTCGGTG GTGGTGAGCGGCGAGCCCAAGGCGCGCGCCCGCATCATCCAGATGGTGCACCAGCTCGACCGTGACCTGCAGAGCCAGGG CAACACCCGGGTCTTCTATCTGAAATACGGCAAGGCCAAGGATCTGGTGGAGGTGCTCAAGGGCGTCAGCTCCAGCATCG AGGCGGACAAGAAGGGCGGCGCGGCCACCACCACGGGCGGTGGCGGTGCCAGCATCGGCGGCGGCAAGCTGGCCATCTCC GCCGACGAGACCACCAATGCGCTGGTGATCACCGCCCAGCCGGACGTGATGGCCGAGCTGGAGCAGGTGGTCGCCAAGCT CGACATCCGCCGTGCCCAGGTACTGGTGGAGGCGATCATCGTCGAGATCGCCGATGGCGACGGTCTCAACCTCGGGGTGC AGTGGGCCAATACCAATGGAGGCGGTACCCAGTTTACTGACACCAACCTGCCCATCGGTTCGGTGGCCATCGCGGCCAAG GATTATCAGAAGAACGGTACCACCACAGGTTTGGCTGCCTTGGCCAAGGATTTCAACGGCATGGCGGCCGGCTTCTACAA GGGCAACTGGGCCGCGCTGGTCACCGCGCTCTCCACCAACACCAAGAACGATATTCTCTCCACGCCGAGTATCGTCACCA TGGACAACAAGGAAGCCTCCTTCAACGTCGGCCAGGAAGTGCCGGTGCAGAGCGGTTCCCAGAGCTCCACCACCAGCGAT CAGGTGTTCAACACCATCGAGCGCAAGACGGTGGGTACCAAGTTGGTGGTGACGCCGCAGATCAACGAAGGGGATTCCGT GCTGCTCAACATCGAGCAGGAGGTCTCCAGCGTGGCGCAGACCCAGGCACCCGGTACCAGCACGCTGGGCCCGACCTTCG ATACCCGTACCATCAAGAACGCTGTGCTGGTGAAGAGTGGCGAGACCGTGGTGCTGGGTGGTTTGATGGACGAGAAGACC CAGGAGAAGGTCTCCAAGGTACCGCTGCTCGGCGACATCCCGGTGCTGGGTTATCTGTTCCGCTCGACCTCCAACTCGAC CTCCAAGCGCAATCTGATGGTCTTTATCCGACCGACCATTTTGCGTGATGCCGATGTCTACAGCGGTATCTCCAGCAACA AGTACTCCCAGTTCCGCTCCGAGCAGCAGGAGGCGGCGGCGCAGGAGGGCTATCTCACCTCGCCCAAGCGCCAGGTGCTG CCCCAGTACGGCCAGGGCGTGACCATGTCGCCCGAGGTGCAGAAGCAGCTCCAGCAGACACAGCAGGCCCCGCAGGCGAG CGGCGGGTCCCAGCCATTCGTGGGTAACAAGTAA Protein sequence : MINKGKGWRLATVAAALMMAGSAWATEYSASFKNADIEEFINTVGKNLNKTIIIEPSVRGKINVRSYDLLNEDQYYQFFL SVLDVYGFAVVPMDNGVLKVVRSKDAKTSAIPVVDESNPGSGDEMVTRVVPVRNVSVRELAPLLRQLNDNAGGGNVVHYD PSNVLLITGRAAVVNRLVEVVRRVDKAGDQEVDIVKLKYASAGEMVRLVTNLNKDGNNQGGNTSLLLAPKVVADERTNSV VVSGEPKARARIIQMVHQLDRDLQSQGNTRVFYLKYGKAKDLVEVLKGVSSSIEADKKGGAATTTGGGGASIGGGKLAIS ADETTNALVITAQPDVMAELEQVVAKLDIRRAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTNLPIGSVAIAAK DYQKNGTTTGLAALAKDFNGMAAGFYKGNWAALVTALSTNTKNDILSTPSIVTMDNKEASFNVGQEVPVQSGSQSSTTSD QVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSSVAQTQAPGTSTLGPTFDTRTIKNAVLVKSGETVVLGGLMDEKT QEKVSKVPLLGDIPVLGYLFRSTSNSTSKRNLMVFIRPTILRDADVYSGISSNKYSQFRSEQQEAAAQEGYLTSPKRQVL PQYGQGVTMSPEVQKQLQQTQQAPQASGGSQPFVGNK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 9e-129 | 49 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-120 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_855102.1 | general secretion pathway protein D | VFG2047 | Protein | 7e-119 | 47 |
