Gene Information

Name : kdsB (AHA_2775)
Accession : YP_857280.1
Strain : Aeromonas hydrophila ATCC 7966
Genome accession: NC_008570
Putative virulence/resistance : Virulence
Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 3115397 - 3116158 bp
Length : 762 bp
Strand : -
Note : identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466

DNA sequence :
ATGAGCTTCGTCGTCGTCATTCCGGCCCGCTACGCCTCCACCCGGCTGCCGGGCAAGCCGCTGGCCGACATCCACGGCAA
GCCCATGGTGCAGCACGTGGTGGAAAAGGCTCTGCAGTCGGGCGCCGATCGGGTGATCGTCGCCACCGATGACGAGCGGG
TGCAGCAGGCGCTGGCCGCCTGCGCCGGGCAGGCCGGTTTCGAGGTGTGCATGACCTCGAAGGATCATCAGTCCGGCACC
GAGCGGCTGGCCGAGGTGTGCCGTCACTACGGCTTTGCCGCCGACACCATAGTGGTCAACGTGCAGGGGGACGAGCCGCT
CATTCCGCCGGTCATCATCCGCCAGGTGGCGGACAACCTGGCCGCCGCCACGGCGCCCATGGCGACCCTGTCGGTGCCGA
TCCAGGACGCCGAAGAGGTGTTCAACCCGAACGCCGTCAAGGTGGTGACCGACCAGGAGGGCTACGCCCTCTACTTCAGT
CGCGCCTCCATTCCCTGGGATCGGGATCGCTTTGCCGCGAGTCGCGAGCAGATTGGCGATCACTACCAGCGCCACATCGG
CATCTACGCCTATCGCGCCGGCTTCATCCAGCGTTATGTGGACTGGGCGCCGAGCGCGCTCGAGCAGATCGAGGCGCTGG
AACAGCTGCGGGTGCTCTGGTACGGGGAGAAGATCCACGTGGCCCAGGCGCTCGAGGCGCCGCCGGTCGGGGTGGATACC
CAGGCCGATCTGGACAAGGTGCGCGCGCTGCTGGCGAACTGA

Protein sequence :
MSFVVVIPARYASTRLPGKPLADIHGKPMVQHVVEKALQSGADRVIVATDDERVQQALAACAGQAGFEVCMTSKDHQSGT
ERLAEVCRHYGFAADTIVVNVQGDEPLIPPVIIRQVADNLAAATAPMATLSVPIQDAEEVFNPNAVKVVTDQEGYALYFS
RASIPWDRDRFAASREQIGDHYQRHIGIYAYRAGFIQRYVDWAPSALEQIEALEQLRVLWYGEKIHVAQALEAPPVGVDT
QADLDKVRALLAN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 1e-35 47
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 3e-35 47
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 1e-35 47