Gene Information

Name : AHA_1079 (AHA_1079)
Accession : YP_855621.1
Strain : Aeromonas hydrophila ATCC 7966
Genome accession: NC_008570
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1180233 - 1180763 bp
Length : 531 bp
Strand : -
Note : identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608

DNA sequence :
ATGCGGTGGGGCGATGGCGTATGGAGCCTAATCATGTTGCATCACAAACTGATCGCCGGGGAGATCCCCGGCACCTATCG
GGTAACCGACCTTGTCACCGACGACGACCTGCTCACCATCGCCCAAGCAGTTGCCCGTCAGAAACTGGCCAAGGGAGAAG
CTATTACCGATAAACACGTGGCCCATCAGGCCCTGCAAGGGCTGCTGCAAACACGGGATCGCGAAGTGTTTGCGGCACTT
TTCCTCGATAACCAACACAGGGTCCTGGCCTACGAGGAGCTGTTCCTTGGCACCCTGTCCGCTGCGACCGTCTACCCCCG
CGATGTAGTCAAGCAGGCACTGCACTACAATGCTGCCGCTCTGATGCTGGTGCATAACCACCCGTCGGGATACCCGGAAC
CCAGCCGGGCAGATATCGCGATTACTCTGCGCCTACAGAATGCCCTGGCACTGGTGGATATCCGGATTTTGGATCATCTG
GTCGTCGGTACTGAGGGAGTGGTGTCGCTGGCAGAACGGGGACTGATATGA

Protein sequence :
MRWGDGVWSLIMLHHKLIAGEIPGTYRVTDLVTDDDLLTIAQAVARQKLAKGEAITDKHVAHQALQGLLQTRDREVFAAL
FLDNQHRVLAYEELFLGTLSAATVYPRDVVKQALHYNAAALMLVHNHPSGYPEPSRADIAITLRLQNALALVDIRILDHL
VVGTEGVVSLAERGLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-27 55
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-27 55
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-27 55
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 1e-24 50
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 4e-20 48
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 6e-20 48
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 6e-20 48
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-19 47
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 8e-20 47
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 3e-20 47
unnamed AAL08475.1 unknown Not tested SRL Protein 5e-20 47
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 5e-23 46
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 8e-20 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AHA_1079 YP_855621.1 DNA repair protein RadC VFG1119 Protein 9e-28 55
AHA_1079 YP_855621.1 DNA repair protein RadC VFG0660 Protein 2e-20 48
AHA_1079 YP_855621.1 DNA repair protein RadC VFG1066 Protein 2e-20 47