Name : AHA_1079 (AHA_1079) Accession : YP_855621.1 Strain : Aeromonas hydrophila ATCC 7966 Genome accession: NC_008570 Putative virulence/resistance : Virulence Product : DNA repair protein RadC Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2003 EC number : - Position : 1180233 - 1180763 bp Length : 531 bp Strand : - Note : identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608 DNA sequence : ATGCGGTGGGGCGATGGCGTATGGAGCCTAATCATGTTGCATCACAAACTGATCGCCGGGGAGATCCCCGGCACCTATCG GGTAACCGACCTTGTCACCGACGACGACCTGCTCACCATCGCCCAAGCAGTTGCCCGTCAGAAACTGGCCAAGGGAGAAG CTATTACCGATAAACACGTGGCCCATCAGGCCCTGCAAGGGCTGCTGCAAACACGGGATCGCGAAGTGTTTGCGGCACTT TTCCTCGATAACCAACACAGGGTCCTGGCCTACGAGGAGCTGTTCCTTGGCACCCTGTCCGCTGCGACCGTCTACCCCCG CGATGTAGTCAAGCAGGCACTGCACTACAATGCTGCCGCTCTGATGCTGGTGCATAACCACCCGTCGGGATACCCGGAAC CCAGCCGGGCAGATATCGCGATTACTCTGCGCCTACAGAATGCCCTGGCACTGGTGGATATCCGGATTTTGGATCATCTG GTCGTCGGTACTGAGGGAGTGGTGTCGCTGGCAGAACGGGGACTGATATGA Protein sequence : MRWGDGVWSLIMLHHKLIAGEIPGTYRVTDLVTDDDLLTIAQAVARQKLAKGEAITDKHVAHQALQGLLQTRDREVFAAL FLDNQHRVLAYEELFLGTLSAATVYPRDVVKQALHYNAAALMLVHNHPSGYPEPSRADIAITLRLQNALALVDIRILDHL VVGTEGVVSLAERGLI |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
VC1786 | NP_231421.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 3e-27 | 55 |
VC0395_A1383 | YP_001217326.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 3e-27 | 55 |
VPI2_0034 | ACA01849.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 2e-27 | 55 |
VC0510 | NP_230161.1 | DNA repair protein RadC-like protein | Not tested | VSP-2 | Protein | 1e-24 | 50 |
unnamed | AAK00479.1 | unknown | Not tested | SHI-1 | Protein | 4e-20 | 48 |
yeeS | NP_838484.1 | RADC family DNA repair protein | Not tested | SHI-1 | Protein | 6e-20 | 48 |
yeeS | NP_708770.1 | RADC family DNA repair protein | Not tested | SHI-1 | Protein | 6e-20 | 48 |
Z1657 | NP_287160.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 2e-19 | 47 |
Z1217 | NP_286752.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 8e-20 | 47 |
yeeS | CAI43901.1 | YeeS protein | Not tested | LEE | Protein | 3e-20 | 47 |
unnamed | AAL08475.1 | unknown | Not tested | SRL | Protein | 5e-20 | 47 |
radC | AAN62140.1 | putative DNA repair protein RadC | Not tested | PAGI-2(C) | Protein | 5e-23 | 46 |
radC | AAN62275.1 | putative DNA repair protein RadC | Not tested | PAGI-3(SG) | Protein | 8e-20 | 43 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
AHA_1079 | YP_855621.1 | DNA repair protein RadC | VFG1119 | Protein | 9e-28 | 55 |
AHA_1079 | YP_855621.1 | DNA repair protein RadC | VFG0660 | Protein | 2e-20 | 48 |
AHA_1079 | YP_855621.1 | DNA repair protein RadC | VFG1066 | Protein | 2e-20 | 47 |