Gene Information

Name : dnaB (AHA_1012)
Accession : YP_855558.1
Strain : Aeromonas hydrophila ATCC 7966
Genome accession: NC_008570
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 1092822 - 1094216 bp
Length : 1395 bp
Strand : +
Note : identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665

DNA sequence :
ATGGCAGAGCAAGTGACGGCGAAAAAAGACGCCAAGACACAACAGCTGAAAGTACCTCCCCACTCTTTTGAGGCCGAACA
GTCCGTACTGGGCGGCCTGATGCTGGACAACGAGGCCTGGGATCGGGTTGCCGAACGGGTGATCGACAAGGATTTCTACA
GCCGCCCGCACCGCCTTATCTTCCAGGCCATGACCCGCCTCTCCAACGCGGGCAATCCCATCGACCTCATCACCTTGCAG
GAGGAGCTGGAGCGCTCCGAACAGCTGGAAGAGGCCGGTGGCTTCGCCTATCTGGTGGAGATCGCCAAGAACACCCCGAG
TGCCGCCAACATCAGTGCCTACGCCGAGATCGTGCGTGAGCGGGCGGTAGTACGGGAGATGATCTCGGTCGCCAACGAGA
TAGTCGAAGCAGGCTATGAGCCGCAAGGGCGTACCTCCGGCGATCTGCTCGACCTGGCCGAGAGCAAGGTATTCAAGATT
GCCGAGCAGCGCAGCAGCGCCAACGAGGGGCCCCAGCCGCTCAAGCTTATTCTCGAGCAGACCGTCGACAAGATTGAAGA
GCTGTTCAAGACGCCCCACAACGGGGTGACCGGGGTATCGAGCGGTTACGGTGATCTCGACAAGATGACCGCCGGCCTGC
AGCGCTCGGATCTGGTGATCGTCGCGGCCCGTCCCTCCATGGGCAAGACGACGTTTGCCATGAACCTGTGCGAGCATGCG
GCGCTCACCGCCGACAAGCCGGTACTGATCTTCTCCCTCGAGATGCCCTCCGAGCAGATCATCATGCGTATGCTCGCCTC
GGTGGGGCGCATCGACCAGACCAAGGTGCGAACCGGTCAGCTCGACGACGAGGACTGGGCGCGGCTCTCCTCCACCATGG
GATTGCTGCTGGAGAAGGGCAAGATGTACATCGATGACGCCTCCGGCCTCACCCCGACCGACGTGCGTTCTCGCGCCCGT
CGTATCGCCCGTGAGCACGGCGGCCTCTCGATGATCATGATCGACTACCTGCAGCTGATGCGGGTGCCGGCGCTCTCTGA
CAACCGGACCCTGGAGATCGGCGAGATCTCCCGCTCCCTCAAGGCGCTGGCGAAAGAGTTGCAGTGCCCGGTGGTGGCGC
TCTCCCAGCTCAACCGAAGCCTGGAACAGCGGGCCGACAAGCGCCCGGTCAACTCGGATCTGCGGGAATCGGGCTCCATT
GAGCAGGATGCGGACTTGATCATGTTCATCTACCGCGACGAGGTCTATCACGACGACAGCCCCGACAAGGGGATCGCCGA
GATCATCATCGGCAAGCAGCGTAACGGCCCCATAGGCCGGGTACGCCTCACCTTCCAGGGTCAGTTCTCACGTTTTGACA
ACTACGCGGGTCCGGCGTTTGATGATGACTACTGA

Protein sequence :
MAEQVTAKKDAKTQQLKVPPHSFEAEQSVLGGLMLDNEAWDRVAERVIDKDFYSRPHRLIFQAMTRLSNAGNPIDLITLQ
EELERSEQLEEAGGFAYLVEIAKNTPSAANISAYAEIVRERAVVREMISVANEIVEAGYEPQGRTSGDLLDLAESKVFKI
AEQRSSANEGPQPLKLILEQTVDKIEELFKTPHNGVTGVSSGYGDLDKMTAGLQRSDLVIVAARPSMGKTTFAMNLCEHA
ALTADKPVLIFSLEMPSEQIIMRMLASVGRIDQTKVRTGQLDDEDWARLSSTMGLLLEKGKMYIDDASGLTPTDVRSRAR
RIAREHGGLSMIMIDYLQLMRVPALSDNRTLEIGEISRSLKALAKELQCPVVALSQLNRSLEQRADKRPVNSDLRESGSI
EQDADLIMFIYRDEVYHDDSPDKGIAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAGPAFDDDY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 4e-98 53
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 5e-99 52
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 2e-99 52
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 3e-99 50
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 3e-87 49
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 5e-89 49
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 5e-89 49
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-97 48
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 6e-80 46