Gene Information

Name : AHA_1004 (AHA_1004)
Accession : YP_855550.1
Strain : Aeromonas hydrophila ATCC 7966
Genome accession: NC_008570
Putative virulence/resistance : Virulence
Product : sigma-54 factor interaction domain-containing protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1084375 - 1085781 bp
Length : 1407 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954

DNA sequence : 
GTGGCGGAAAGCAAACCTCGAGTCCTGTTGGTGGAAGATACCCGCAGTCTGGCGGTGGTCTATGAACAGTATCTGGCCCA
GGATGGCTACGAGGTGCTGCGGGCCGATTGCGGCCAGCAGGCATTGGCGCAGCTGCTGAGCAGCCCGCCGCCGGTGGTGC
TGCTGGATCTCGAGCTGCCAGACATGTCCGGCATGGACATCCTGCAGCAGATCACCGAACAGCAGCTGCCCTGCTCGGTG
GTGGTGATCACCGCCCACGGCTCGGTGGATGTGGCGGTGGAGGCGATGCGGCTCGGCGCCTTCGACTTTCTGACCAAGCC
GTTCGACGGCAAGCGGCTGTGCGCCAATGCGCGCAATGCCCTCAAGCACCAGCAGCTCAGCTCGCTGGTGGCCCAGTACC
GGGAGAACTTCGAGCGCAGCTCGTTTGCCGGCTTCATCGGTGCCTCCATGCCGATGCAGGCGGTCTATCGCATCATCGAG
AGCGCGGCGCCGAGCAAGGCGACCGTGTTCATCACCGGCGAGAGCGGCACCGGCAAGGAGGTGTGCGCCGAGGCCATCCA
CCAGTGCAGCCCCCGTCGCGAGCAGCCCTTCATCGCCCTCAACTGCGCCGCCATTCCCCACGACCTGATGGAAAGCGAGA
TCTTCGGCCACGTGAAGGGGTCGTTCACCGGCGCGCAGGGGGATCGCAAGGGGGCGGCCAGCCTGGCGGATGGCGGCACC
CTGTTTCTGGACGAGATCTGCGAGATGGATCTCGACCTGCAGAGCAAGCTGCTGCGCTTCATCCAGACCGGTACCCTGCA
GCGGGTCGGCAGCGGCAAGCTGGAGACGGTGGACGTGCGCTTCGTCTGCGCCACCAACCGCGATCCCCTGCTGGAGGTGA
AGGCGGGGCGTTTTCGCGAGGATCTCTACTACCGGTTGCACGTCATCCCCCTCAGCCTGCCGCCGCTGCGCGAGCGGGGC
GAGGACATACTGCTGCTGGCGCGAACCCTGCTGCAGAGTTATGCCAAGGAAGAGAACAAGCGCTTCAAGGATTTCGATGC
CGAGGCGGCGCGGGTGCTGCTCGATTACCCCTGGCCCGGCAACGTGCGCGAGCTGCAGAACGTGGTGCGCAACATAGTGG
TGCTCAACGATCGCGAGCTGGTGAGCCCCGACATCTTGCCGCCCCCGCTCAACGGCAGCCGTGCCAGCTTGCTGGCGGCG
ATCCCCGCTGCGGCCGCGACCGGCAGCGGTGCCGTGGTGGTGGCCAATGCCCCGATCCGCCCGCTCTGGCTGGTGGAGAA
AGAGACCATAGAGCAGGCCATCGCCAGCTGTGACGGCAACATCCCCAAGGCGGCGGCGTTGCTGGAGATCAGCCCTTCCA
CCATCTATCGCAAGAAACAGGGCTGGGAAGAGGCGAGTCTGGCGTGA

Protein sequence : 
MAESKPRVLLVEDTRSLAVVYEQYLAQDGYEVLRADCGQQALAQLLSSPPPVVLLDLELPDMSGMDILQQITEQQLPCSV
VVITAHGSVDVAVEAMRLGAFDFLTKPFDGKRLCANARNALKHQQLSSLVAQYRENFERSSFAGFIGASMPMQAVYRIIE
SAAPSKATVFITGESGTGKEVCAEAIHQCSPRREQPFIALNCAAIPHDLMESEIFGHVKGSFTGAQGDRKGAASLADGGT
LFLDEICEMDLDLQSKLLRFIQTGTLQRVGSGKLETVDVRFVCATNRDPLLEVKAGRFREDLYYRLHVIPLSLPPLRERG
EDILLLARTLLQSYAKEENKRFKDFDAEAARVLLDYPWPGNVRELQNVVRNIVVLNDRELVSPDILPPPLNGSRASLLAA
IPAAAATGSGAVVVANAPIRPLWLVEKETIEQAIASCDGNIPKAAALLEISPSTIYRKKQGWEEASLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-56 44
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-56 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AHA_1004 YP_855550.1 sigma-54 factor interaction domain-containing protein BAC0467 Protein 3e-63 47
AHA_1004 YP_855550.1 sigma-54 factor interaction domain-containing protein BAC0089 Protein 8e-66 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AHA_1004 YP_855550.1 sigma-54 factor interaction domain-containing protein VFG1249 Protein 2e-57 44
AHA_1004 YP_855550.1 sigma-54 factor interaction domain-containing protein VFG0116 Protein 9e-57 43