Gene Information

Name : gspH (APECO1_3462)
Accession : YP_854403.1
Strain : Escherichia coli APEC O1
Genome accession: NC_008563
Putative virulence/resistance : Virulence
Product : type II secretion protein GspH
Function : -
COG functional category : N : Cell motility
COG ID : COG2165
EC number : -
Position : 3382806 - 3383369 bp
Length : 564 bp
Strand : -
Note : -

DNA sequence : 
GTGCCTGAACGCGGATTCACACTTCTGGAAATCATGCTGGTGATTTTCCTTATCGGCCTTGCCAGTGCGGGCGTGGTACA
GACGTTTGCGACCGCTTCAGAGCCGCCTGCGAAAAAAGCGGCGCAGGATTTTCTGACTCGCTTTGCGCAGTTTAAGGACA
GGGCAGTGATCGAAGGGCAAACACTCGGTGTGCTAATCGACCCGCCAGGTTACCAGTTTATGCAGCGTCGTCACGGGCAA
TGGTTGCCCGTTTCTGCGACCCGGTTATCGGCACAGGTTACGGTGCCGAAACAGGTGCAGATGCTGTTACAACCCGGCAG
TGATATCTGGCAGAAGGAATATGCGCTGGAGCTGCAGCGTCGTCGCCTGACGCTGCACGATATTGAACTGGAGCTGCAAA
AAGAGGCGAAAAAGAAGACGCCGCAGATCCGTTTTTCGCCTTTTGAACCCGCCACGCCGTTTACGCTGCGCTTCTACTCG
GCGGCGCAAAACGCATGTTGGGCGGTAAAGCTGGCGCACGATGGCGCGTTATCCCTCAATCAATGTGATGAGAGGATGCC
ATGA

Protein sequence : 
MPERGFTLLEIMLVIFLIGLASAGVVQTFATASEPPAKKAAQDFLTRFAQFKDRAVIEGQTLGVLIDPPGYQFMQRRHGQ
WLPVSATRLSAQVTVPKQVQMLLQPGSDIWQKEYALELQRRRLTLHDIELELQKEAKKKTPQIRFSPFEPATPFTLRFYS
AAQNACWAVKLAHDGALSLNQCDERMP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspH YP_854403.1 type II secretion protein GspH Not tested PAI I APEC-O1 Protein 1e-85 100
gspH CAE85230.1 GspH, hypothetical type II secretion protein Not tested PAI V 536 Protein 4e-79 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspH YP_854403.1 type II secretion protein GspH VFG2051 Protein 2e-79 98