Gene Information

Name : gspK (APECO1_3465)
Accession : YP_854400.1
Strain : Escherichia coli APEC O1
Genome accession: NC_008563
Putative virulence/resistance : Virulence
Product : type II secretion protein GspK
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3156
EC number : -
Position : 3380862 - 3381839 bp
Length : 978 bp
Strand : -
Note : -

DNA sequence : 
ATGATCACCTCACCACCAAAACGCGGAATGGCACTGGTCGTGGTGCTGGTATTGCTGGCGGTTATGATGCTGGTGACCAT
CACGCTTTCCGGGCGGATGCAGCAACAACTTGGGCGAACGCGCAGCCAGCAGGAGTACCAGCAGGCGCTGTGGTACAGCG
CCAGTGCAGAAAGCCTGGCGCTGAGCGCGCTCAGTCTGAGCCTGAAAAATGAAAAGCGTGTGCATCTGGCACAACCGTGG
GCTTCTGGCCCGCGTTTTTTCCCACTGCCGCAGGGGCAAATTGCCGTCACTCTGCGTGACGCACAGGCCTGCTTTAACCT
GAATGCCCTCGCTCAGCCGACGACGGCGTCGCGTCCGCTCGCGGTACAACAACTGATTGCCCTGATCTCGCGCCTCGATG
TGCCTGCTTATCGGGCCGAACTGATAGCCGAAAGCCTGTGGGAGTTTATTGACGAAGACCGCAGCGTGCAGACGCGTCTG
GGTCGTGAAGACAGCGAGTATCTCGCCCGCTCGGTGCCGTTCTACGCCGCTAATCAACCGCTGGCTGATATCAGCGAGAT
GCGCGTGGTGCAGGGAATGGACGCCGGGCTTTATCAAAAACTGAAACCGTTGGTCTGTGCGCTGCCGATGGCCCGCCAGC
AAATCAACATCAATACATTAGATGTCACGCAAAGTGTGATTCTTGAGGCGCTGTTTGACCCGTGGTTAAGCCCTGTTCAG
GCGCGGGCATTATTACAACAACGTCCGGCGAAGGGCTGGGAAGATGTCGATCAGTTTCTTGCTCAGCCGCTACTTGCAGA
CGTCGATGAGCGTACTAAAAAACAGCTAAAAACCATCCTGAGCGTGGACAGCAATTACTTCTGGCTGCGTTCAGATATCA
CCGTGAATGAGATTGAACTGACGATGAATTCGTTAATTGTCCGCATGGGCCCACAACACTTTTCTGTTCTCTGGCATCAG
ACAGGAGAAAGTGAGTGA

Protein sequence : 
MITSPPKRGMALVVVLVLLAVMMLVTITLSGRMQQQLGRTRSQQEYQQALWYSASAESLALSALSLSLKNEKRVHLAQPW
ASGPRFFPLPQGQIAVTLRDAQACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRL
GREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMARQQININTLDVTQSVILEALFDPWLSPVQ
ARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTILSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQ
TGESE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspK YP_854400.1 type II secretion protein GspK Not tested PAI I APEC-O1 Protein 4e-127 100
gspK CAE85227.1 GspK, hypothetical type II secretion protein Not tested PAI V 536 Protein 5e-126 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspK YP_854400.1 type II secretion protein GspK VFG2054 Protein 3e-126 99