Gene Information

Name : papA (APECO1_3519)
Accession : YP_854256.1
Strain : Escherichia coli APEC O1
Genome accession: NC_008563
Putative virulence/resistance : Virulence
Product : major fibrial protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3539
EC number : -
Position : 3323359 - 3323928 bp
Length : 570 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAAAGAGGTTGTTATTTATGATTAAGTCGGTTATTGCCGGTGCGGTAGCTATGGCAGTGGTGTCTTTTGGTGTAAA
TGCTGCTCCAACTATTCCACAGGGGCAGGGTAAAGTAACTTTTAACGGAACTGTTGTTGATGCTCCATGCAGCATTTCTC
AGAAATCAGCTGATCAGTCTATTGATTTTGGACAGCTTTCAAAAAGCTTCCTTGAGGCAGGAGGTACATCCAAGCCAATG
GATTTAGATATTGAGTTAGTAAATTGCGATATTACAGCTTTTAAACAAGGTCAAGCAGCTAAAAACGGTAAGGTTCAATT
ATCTTTTACTGGGCCACAAGTAACGGGGCAGGCTGAAGAATTAGCAACTAACGGCGGTACGGGCACAGCTATTGTAGTTC
AGGCTGCAGGCAAAAACGTTTCTTTCGATGGGACTGCAGGTGACGCTTATCCCCTGAAAGATGGTGATAATGTTCTTCAT
TATACAGCTCTTGTGAAAAAAGCGAATGGCGGTACTGTTTCTGAAGGTGCTTTTTCTGCAGTTGCAACCTTTAATTTAAG
TTACCAGTAA

Protein sequence : 
MKKRLLFMIKSVIAGAVAMAVVSFGVNAAPTIPQGQGKVTFNGTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGTSKPM
DLDIELVNCDITAFKQGQAAKNGKVQLSFTGPQVTGQAEELATNGGTGTAIVVQAAGKNVSFDGTAGDAYPLKDGDNVLH
YTALVKKANGGTVSEGAFSAVATFNLSYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papA AAZ04426.1 major fibrial protein Virulence PAI I APEC-O1 Protein 1e-82 100
papA YP_854256.1 major fibrial protein Virulence PAI I APEC-O1 Protein 2e-82 100
papA AAC61718.1 PapA Virulence PAI I CFT073 Protein 7e-31 66
papA AAL67417.1 PapA Virulence PAI II CFT073 Protein 3e-53 65
papA NP_755467.1 PapA protein Virulence PAI I CFT073 Protein 3e-48 65
papA_2 NP_757036.1 PapA protein Virulence PAI II CFT073 Protein 8e-53 65
papA YP_002414017.1 P-fimbriae major subunit Not tested Not named Protein 4e-43 63
prfA CAD42031.1 PrfA protein Virulence PAI II 536 Protein 2e-44 59
pixA CAE85161.1 PixA protein Not tested PAI V 536 Protein 9e-34 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papA YP_854256.1 major fibrial protein VFG0882 Protein 9e-49 65
papA YP_854256.1 major fibrial protein VFG0893 Protein 2e-53 65
papA YP_854256.1 major fibrial protein VFG1550 Protein 7e-45 59