Gene Information

Name : papH (APECO1_3520)
Accession : YP_854255.1
Strain : Escherichia coli APEC O1
Genome accession: NC_008563
Putative virulence/resistance : Virulence
Product : minor pilin subunit PapH
Function : -
COG functional category : N : Cell motility
COG ID : COG3539
EC number : -
Position : 3322709 - 3323296 bp
Length : 588 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGAATTTTTGTGTTCTGTTTGTGATGTATTTCTGGAGTACATTACTTCATGCTGTATCTTCAGAGCCATTTCCTCC
GCCCGGCATGACCCTTCCTGAATACTGGGGAGAAGAACACGTATGGTGGGACGGCAGGGCTGCTTTTCATGGTGAGGTTG
TCAGACCTGCCTGTACTCTGGCGATGGAAGACGCCTGGCAGATTATCGATATGGGGGAAACCCCGGTTCGGGATTTACAG
AATGGTTTTTCCGGACCTGAAAGAAAATTCAGCCTCCGGCTCAGGAACTGTGAATTTAACAGTCAGGGTGGGAACCTTTT
CTCTGATTCCCGGATAAGGGTGACTTTCGATGGCGTCCGGGGTGAAACGCCGGATAAGTTTAATTTATCCGGTCAGGCAA
AAGGAATTAATCTGCAGATAGCTGATGCCAGGGGGAATATTGCCCGGGCAGGGAAAGTAATGCCTGCAATACCATTGACG
GGTAATGAAGAAGCGCTGGATTACACCCTCAGAATTGTGAGAAACGGAAAAAAACTTGAAGCCGGAAATTATTTTGCCGT
GCTGGGATTCCGGGTCGATTATGAGTGA

Protein sequence : 
MKNFCVLFVMYFWSTLLHAVSSEPFPPPGMTLPEYWGEEHVWWDGRAAFHGEVVRPACTLAMEDAWQIIDMGETPVRDLQ
NGFSGPERKFSLRLRNCEFNSQGGNLFSDSRIRVTFDGVRGETPDKFNLSGQAKGINLQIADARGNIARAGKVMPAIPLT
GNEEALDYTLRIVRNGKKLEAGNYFAVLGFRVDYE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papH YP_854255.1 minor pilin subunit PapH Virulence PAI I APEC-O1 Protein 3e-89 100
papH AAZ04425.1 fimbrial regulatory protein Virulence PAI I APEC-O1 Protein 2e-89 100
papH NP_755466.1 PapH protein Virulence PAI I CFT073 Protein 5e-78 94
papH_2 NP_757035.1 PapH protein Virulence PAI II CFT073 Protein 5e-78 94
papH AAL67416.1 PapH Virulence PAI II CFT073 Protein 4e-78 94
papH YP_002414016.1 minor pilin protein PapH Not tested Not named Protein 1e-77 93
prfH CAD42030.1 PrfH protein Virulence PAI II 536 Protein 9e-79 91
pixH CAE85160.1 PixH protein Not tested PAI V 536 Protein 8e-62 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papH YP_854255.1 minor pilin subunit PapH VFG0894 Protein 2e-78 94
papH YP_854255.1 minor pilin subunit PapH VFG0883 Protein 2e-78 94
papH YP_854255.1 minor pilin subunit PapH VFG1549 Protein 4e-79 91