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Name : papC (APECO1_3521) Accession : YP_854254.1 Strain : Escherichia coli APEC O1 Genome accession: NC_008563 Putative virulence/resistance : Virulence Product : outer membrane usher protein PapC Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3320140 - 3322659 bp Length : 2520 bp Strand : - Note : - DNA sequence : ATGCGTGGAATGAAAGACAGAATACCTTTTGCAGTCAACAATATTACCTGTGTGATATTGTTGTCTCTGTTTTGTAACGC AGCCAGTGCCGTTGAGTTTAATACAGATGTACTTGACGCAGCGGACAAGAAAAATATTGACTTCACCCGTTTTTCAGAAG CCGGCTATGTTCTGCCGGGGCAATATCTTCTGGATGTGATTGTTAACGGGCAAAGTATTTCTCCCGCATCGTTACAGATT TCATTTGTTGAACCTGCGTTGTCAGGAGATAAGGCAGAAAAAAAATTGCCGCAGGCCTGTCTGACATCAGATATGGTCAG ACTGATGGGGTTAACAGCAGAATCTCTGGATAAAGTTGTTTACTGGCATGATGGTCAGTGTGCGGATTTTCATGGGTTGC CGGGAGTGGATATTCGTCCTGATACCGGAGCGGGCGTATTACGCATCAATATGCCGCAGGCCTGGCTTGAGTATTCTGAT GCCACCTGGCTGCCTCCCTCACGCTGGGACGACGGCATTCCCGGACTGATGCTGGATTATAACCTCAACGGGACGGTTTC CCGTAATTATCAGGGAGGAGACTCTCATCAGTTCAGTTATAACGGGACTGTGGGGGGGAATCTGGGGCCCTGGCGCCTGC GGGCTGACTATCAGGGAAGCCAGGAGCAGAGCCGCTACAACGGGGAAAAAACGACAAACAGAAATTTCACATGGAGTCGC TTTTATCTGTTCCGTGCCATTCCACGATGGCGGGCAAACCTGACGCTGGGCGAGAATAATATCAACTCAGATATATTCCG GTCATGGAGTTATACGGGAGCCAGCCTGGAAAGCGATGACCGGATGCTGCCGCCCAGACTGCGAGGCTATGCACCGCAGA TTACCGGGATTGCGGAGACTAATGCCCGTGTTGTGGTGTCGCAGCAGGGACGGGTGCTGTACGACTCGATGGTCCCCGCA GGGCTATTCAGTATTCAGGACCTGGACAGTTCAGTTCGCGGACGTCTTGATGTTGAGGTTATTGAACAGAATGGACGGAA GAAAACCTTTCAGGTCGATACAGCCTCGGTTCCTTATCTGACGCGTCCGGGACAGGTCCGGTATAAACTTGTCTCCGGTC GTTCCCGTGGATACGGGCATGAGACCGAAGGGCCTGTATTTGCGACCGGAGAGGCATCCTGGGGGCTCAGTAACCAGTGG TCGCTGTATGGCGGGGCTGTGCTTGCCGGTGATTATAATGCACTGGCAGCCGGTGCCGGCTGGGACCTGGGTGTGCCGGG GACCCTTTCCGCTGATATCACGCAGTCAGTAGCCCGTATTGAGGGAGAGAGAACGTTTCAGGGAAAATCCTGGCGTCTGA GCTACTCCAAACGGTTTGATAATGCGGATGCCGACATTACGTTCGCCGGGTATCGTTTCTCAGAGCGAAACTATATGACC ATGGAGCAGTACCTGAACGCCCGCTACCGTAATGATTACAGCAGTCGGGAAAAAGAGATGTATACCGTTACGCTGAATAA AAACGTGGCGGACTGGAACACCTCTTTTAACCTGCAGTACAGCCGTCAGACATACTGGGACATACGGAAAACGGACTATT ATACGGTGAGCGTCAACCGCTACTTTAATGTTTTCGGACTGCAGGGTGTGGCGGTTGGATTGGCAGCCTCAAGGTCTAAA TATCTGGGGCGTGATAACGATTCTGCTTACCTGCGTATATCCGTGCCGCTGGGGACGGGGACAGCGAGCTACAGTGGCAG TATGAGTAATGACCGTTATGTGAATATGGCCGGCTACACTGACACGTTCAATGACGGTCTGGACAGCTACAGCCTGAACG CCGGCCTTAACAGTGGCGGTGGACTGACATCGCAACGTCAGATTAATGCCTATTACAGTCATCGTAGTCCGCTGGCAAAT TTGTCCGCGAATATTGCATCCCTGCAGAAAGGATATACGTCTTTCGGCGTCAGTGCTTCCGGTGGGGCAACAATTACCGG AAAAGGTGCGGCGTTACATGCAGGGGGAATGTCCGGTGGAACACGTCTTCTTGTTGACACGGATGGTGTGGGAGGTGTAC CGGTTGATGGCGGGCAGGTGGTGACAAATCGCTGGGGAACGGGCGTGGTGACTGACATCAGCAGTTATTACCGGAATACA ACCTCTGTTGACCTGAAGCGCTTACCGGATGATGTGGAAGCAACCCGTTCTGTTGTGGAATCGGCGCTGACAGAAGGTGC CATTGGTTACCGGAAATTCAGCGTGCTTAAAGGGAAACGTCTGTTTGCAATACTGCGTCTTGCTGATGGCTCTCAGCCCC CGTTTGGTGCCAGTGTAACCAGTGAAAAAGGCCGGGAACTGGGCATGGTGGCCGACGAAGGCCTTGCCTGGCTGAGTGGC GTGACGCCGGGGGAAACCCTGTCGGTAAACTGGGATGGAAAAATACAGTGTCAGGTAAATGTACCGGAGACAGCAATATC TGACCAGCAGTTATTGCTTCCCTGTACGCCTCAGAAATAA Protein sequence : MRGMKDRIPFAVNNITCVILLSLFCNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPGQYLLDVIVNGQSISPASLQI SFVEPALSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVVYWHDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSD ATWLPPSRWDDGIPGLMLDYNLNGTVSRNYQGGDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSR FYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAETNARVVVSQQGRVLYDSMVPA GLFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYLTRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQW SLYGGAVLAGDYNALAAGAGWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYMT MEQYLNARYRNDYSSREKEMYTVTLNKNVADWNTSFNLQYSRQTYWDIRKTDYYTVSVNRYFNVFGLQGVAVGLAASRSK YLGRDNDSAYLRISVPLGTGTASYSGSMSNDRYVNMAGYTDTFNDGLDSYSLNAGLNSGGGLTSQRQINAYYSHRSPLAN LSANIASLQKGYTSFGVSASGGATITGKGAALHAGGMSGGTRLLVDTDGVGGVPVDGGQVVTNRWGTGVVTDISSYYRNT TSVDLKRLPDDVEATRSVVESALTEGAIGYRKFSVLKGKRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSG VTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTPQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 100 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 0.0 | 100 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 0.0 | 99 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 0.0 | 99 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 0.0 | 99 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 0.0 | 99 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 72 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| papC | YP_854254.1 | outer membrane usher protein PapC | VFG1548 | Protein | 0.0 | 99 |
| papC | YP_854254.1 | outer membrane usher protein PapC | VFG0884 | Protein | 0.0 | 99 |
| papC | YP_854254.1 | outer membrane usher protein PapC | VFG0895 | Protein | 0.0 | 99 |
