Gene Information

Name : papF (APECO1_3526)
Accession : YP_854249.1
Strain : Escherichia coli APEC O1
Genome accession: NC_008563
Putative virulence/resistance : Virulence
Product : P pilus minor tip component PapF
Function : -
COG functional category : N : Cell motility
COG ID : COG3539
EC number : -
Position : 3317048 - 3317578 bp
Length : 531 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTTCTGTGCCGCTCTCCGGAGGGGGGATGATTCGTTTATCATTATTTATATCGTTGCTTCTGACATCGGTCGCTGT
ACTGGCTGATGTGCAGATTAACATCAGGGGAAATGTTTATATCCCCCCATGCACCATTAATAACGGGCAGAATATTGTTG
TCGATTTTGGGAATATTAATCCTGAGCACGTGGACAACTCACGTGGTGAAATCACAAAAACCATAAGCATATCCTGTACG
TATAAGAGTGGCTCACCCTGGATAAAGGTCACAGGTAATGCAATGGCTGGGCAGACTAATGTACTGGCAACAAATATAGC
CAATTTTGGTATAGCGTTGTATCAGGGAAAAGGAATGTCAACACCTCTTACATTAGGTAATGGTTCAGGAAATGGTTACA
GAGTGACAGCAGGTCTGGACACAGCACGTTCAACGTTCACCTTTACTTCAGTGCCCTTTCGTAATGGCAGCAGGACACTG
AATGGCGGGGATTTCCGGACCACGGCCAGTATGAGCATGATTTATAACTGA

Protein sequence : 
MFSVPLSGGGMIRLSLFISLLLTSVAVLADVQINIRGNVYIPPCTINNGQNIVVDFGNINPEHVDNSRGEITKTISISCT
YKSGSPWIKVTGNAMAGQTNVLATNIANFGIALYQGKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFTSVPFRNGSRTL
NGGDFRTTASMSMIYN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papF YP_854249.1 P pilus minor tip component PapF Virulence PAI I APEC-O1 Protein 3e-77 100
papF AAZ04419.1 P pilus minor tip component Virulence PAI I APEC-O1 Protein 2e-77 100
papF NP_755459.1 PapF protein Virulence PAI I CFT073 Protein 9e-77 99
papF_2 NP_757028.1 PapF protein Virulence PAI II CFT073 Protein 9e-77 99
papF YP_002414010.1 Fimbrial adapter PapF Not tested Not named Protein 7e-77 99
prfF CAD42024.1 PrfF protein Virulence PAI II 536 Protein 1e-67 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papF YP_854249.1 P pilus minor tip component PapF VFG0900 Protein 3e-77 99
papF YP_854249.1 P pilus minor tip component PapF VFG0889 Protein 3e-77 99
papF YP_854249.1 P pilus minor tip component PapF VFG1543 Protein 5e-68 94