Gene Information

Name : phoP (lwe2449)
Accession : YP_850646.1
Strain : Listeria welshimeri SLCC5334
Genome accession: NC_008555
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2487116 - 2487826 bp
Length : 711 bp
Strand : -
Note : -

DNA sequence :
TTGGTAAAAATTCTTGTAGTTGATGATGAGGCTTCTATTGTTACTTTACTGCAATTTAATATTGAAAAAGCAGGGTTCGA
TGTAGTGACAGCTGAGGATGGTAAAACGGGATATGAACTTGCACTATCCGAAAAACCAGATTTAATTGTACTAGATTTAA
TGCTTCCTGAAATGGACGGAATTGAAGTAACAAAAAAACTGCGTCAAGATAAAGTAAATGTTCCAATCCTAATGTTAACA
GCTAAAGATGAAGAACTAGATAAAATTATTGGTTTAGAGCTAGGAGCAGATGACTATATGACAAAACCATTTAGCCCTAG
AGAAGTTGTTGCTAGAATTAAAGCGATTTTGAGACGGACAGAAGGAAAAGCGGAATCTATCGAAGAAAAAACAGAAGATA
TGGAAGCGACCATTTTAATTGGTGATTTGAAAATATTACCGGACAGTTATGAAGTATATTTACAGGATGATTTATTAGAC
TTAACACCGAAAGAATTTGAGCTGTTATTATTTTTAGCTAATCATCGTGGTAAAGTTTTTTCTAGAGACCAATTGCTGGA
TACAGTTTGGAATTATGATTATGTTGGTGAAACAAGAATAGTCGATGTTCATGTGAGCCATTTACGCGATAAAATTGAGC
TAGATACTAAACAACCAAAATATATTAAAACTATTCGAGGTTTTGGTTATAAAATGGAGAATGTGAAATAA

Protein sequence :
MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLMLPEMDGIEVTKKLRQDKVNVPILMLT
AKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKAESIEEKTEDMEATILIGDLKILPDSYEVYLQDDLLD
LTPKEFELLLFLANHRGKVFSRDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKMENVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-42 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 7e-42 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP YP_850646.1 DNA-binding response regulator HE999704.1.gene2815. Protein 5e-105 98
phoP YP_850646.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 5e-68 59
phoP YP_850646.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 4e-68 59
phoP YP_850646.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 4e-68 59
phoP YP_850646.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 4e-68 59
phoP YP_850646.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 5e-68 59
phoP YP_850646.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 4e-68 59
phoP YP_850646.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 4e-68 59
phoP YP_850646.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 4e-68 59
phoP YP_850646.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 4e-68 59
phoP YP_850646.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 4e-68 59
phoP YP_850646.1 DNA-binding response regulator AE016830.1.gene1681. Protein 1e-69 57
phoP YP_850646.1 DNA-binding response regulator NC_012469.1.7685629. Protein 2e-55 54
phoP YP_850646.1 DNA-binding response regulator NC_012469.1.7686381. Protein 2e-60 49
phoP YP_850646.1 DNA-binding response regulator CP001485.1.gene721.p Protein 3e-36 43
phoP YP_850646.1 DNA-binding response regulator AF162694.1.orf4.gene Protein 6e-38 43
phoP YP_850646.1 DNA-binding response regulator AE000516.2.gene3505. Protein 3e-38 43
phoP YP_850646.1 DNA-binding response regulator CP004022.1.gene3215. Protein 1e-36 41
phoP YP_850646.1 DNA-binding response regulator NC_005054.2598277.p0 Protein 3e-39 41
phoP YP_850646.1 DNA-binding response regulator NC_014475.1.orf0.gen Protein 3e-39 41
phoP YP_850646.1 DNA-binding response regulator EU250284.1.orf4.gene Protein 5e-39 41
phoP YP_850646.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 6e-42 41
phoP YP_850646.1 DNA-binding response regulator CP001138.1.gene4273. Protein 1e-32 41
phoP YP_850646.1 DNA-binding response regulator BAC0533 Protein 1e-32 41
phoP YP_850646.1 DNA-binding response regulator NC_002695.1.915041.p Protein 3e-32 41
phoP YP_850646.1 DNA-binding response regulator CP000647.1.gene4257. Protein 1e-32 41
phoP YP_850646.1 DNA-binding response regulator CP000034.1.gene3834. Protein 3e-32 41
phoP YP_850646.1 DNA-binding response regulator AM180355.1.gene1830. Protein 8e-39 41
phoP YP_850646.1 DNA-binding response regulator CP001918.1.gene5135. Protein 3e-29 41
phoP YP_850646.1 DNA-binding response regulator CP000034.1.gene3671. Protein 2e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP YP_850646.1 DNA-binding response regulator VFG1563 Protein 2e-42 42
phoP YP_850646.1 DNA-binding response regulator VFG1702 Protein 3e-42 42
phoP YP_850646.1 DNA-binding response regulator VFG1389 Protein 1e-33 42
phoP YP_850646.1 DNA-binding response regulator VFG1386 Protein 2e-39 41