Gene Information

Name : polA (lwe1578)
Accession : YP_849775.1
Strain : Listeria welshimeri SLCC5334
Genome accession: NC_008555
Putative virulence/resistance : Unknown
Product : DNA polymerase I
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0749
EC number : -
Position : 1579261 - 1581888 bp
Length : 2628 bp
Strand : -
Note : has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair

DNA sequence :
GTGAATAAATTAGTATTAATTGATGGAAACAGTATTGCGAATCGCGCGTTTTATGCGTTACCGCTTTTAAATAACGATAA
AGGCGTCTATACAAATGCAGTGTATGGATTTGCAATGATGTTGATGAATGTACTCGAAAAAGAAAAGCCTAGCCATGTAC
TGGTTGCTTTTGATGCCGGAAAAACCACATTCCGCCATACAACTTTTAAAGGCTACAAAGGTGGTCGTCAAAAAACGCCA
AGTGAGCTATCTGAACAATTTCCATTTATTCGAGAGCTTTTAACTGCTTACGATATCCCACAATATGAACTTGCTAATTA
TGAAGCAGATGATATTATCGGAACATTAACGAAACAAGCAGAAGCAGATGGGTTGGAAGTAGCCATCATTACTGGGGATC
GTGATTTAACGCAATTAGCTTCAGAAAAAACCACCGTTTATATAACTAAAAAAGGTATAGCGGATATGGAAACAAATACA
CCAGAAACTTTAAAAGAAAAATACAATTTAACACCAACACAAATCATTGATATGAAGGGCTTAATGGGCGATTCATCTGA
TAATATTCCTGGTATCCCTGGTGTAGGTGAAAAGACAGCGTTGAAACTACTCCATGAATTTGGTGGAACAGTGGAAAGCG
TACTAGAACATGCCGAAGAAATTTCTGGTAAAAAATTAAAAGAAAAAGTACTAGAAAACAAGGAATTAGCTGTTTTAAGT
AAAGAATTAGCCACAATTAATGTGAATTCCCCAATCGAATGCACAGTCGAAAGTACGAAATACGACGGCTATCAAACAGA
AAAAGTCATTCCATTATTAAAAGAAATGAATTTTACAACCCTTTTGAAAAATATCGAAGGTGGCGCACCAGAAGAAGTGA
AAGAACTAAAAGAATTATCTTATGAAATAGTAACCGAATTAAAAGAAAAACATTTTGGTGGGAAAACGGCGCTTTATGTA
GAATTAGAAAATGATAATTACCATACAGCGAACTTCATCGGGCTGGCGATTCATTCTGATCAAGGAACCTATTTCTTTAC
AAAAGAAACTGCGGAAAATAGCGTATCGTTCCGGGAATGGGTGGAAAGTGCTCAAACGAAAGTAGTGTATGATGCGAAGA
AAACAATGGTAGCAATGAACAGAATGGGATTTGCTATTTCAGGAATCACATTCGATATTATGTTAGCTTCCTACTTGCTA
AACCCTTCTGATTCCATTGATGACTTTACAAGTGTAGCAGTGCGACATGATTATACCGAAGTAGAAACAGACGAAGCAGT
TTATGGCAAAGGGGCAAAAAGAAGTACACCAGAAGAAAGCATTGTTGCGGGACATTTAGCTAGAAAAGCGGTAGCAATTG
CAGAATTAGAGAAAAGACTGGTAGATGATTTAGAGAAAAATGAGCAATTAGCTTTGATGGAAGACTTAGAGTTGCCACTG
ACATTTGTTTTAGCGCAAATGGAAATGCAAGGGGTTAGTGTAGATACAGAACGTCTTGAAAATATGAAAGTAGAACTAGC
TGGCCGTTTAAAAACATTAGAAACGTCTATTCATTCACTTGCAGGGGAAGAATTTAACATCAATTCACCAAAACAATTAG
GTGTCATTTTATTTGAAAAGCTAGAACTACCTCCAGTGAAGAAAACTAAAACAGGTTATTCAACAGCGGCAGATGTGTTA
GAAAGCTTATCTGGAAAACATGACATTATTGATGAAATCTTGTTATACCGTCAACTTGGTAAGATTCAGTCTACTTATAT
TGAAGGATTACTTAAAGTTACTGACAAAGAAACACATAAAGTTCATACACGTTTTAACCAAACACTAACACAGACTGGTC
GCTTAAGTTCGGTTGATCCAAACCTTCAAAACATTCCAATTCGACTTGAGGAAGGACGGAAGATTAGACAAGTGTTTGTG
CCAAGTAAACCAGGTTGGAAAATATTTTCTGCCGATTATTCTCAAGTAGAATTGCGAGTTTTGGCGCATATTTCAGAAGA
CGAAAACCTAATTTATGCGTTCAAACATGATTATGATATTCATACTAAAACAGCAATGGACGTTTTTCATGTGGAGCAAG
AAGAAGTAGACTCTTTAATGCGTCGTCAAGCCAAGGCAGTTAACTTTGGTATAGTGTATGGTATTAGTGATTATGGCCTA
TCTCAAAACCTTGGTATTACTCGAAAAGATGCCAAAGATTTTATTGATCGTTATTTTGTGAGTTATCCAGCCGTGAAAGA
ATATATGCACGATATCGTCCGTTTTGCGAAAGAAAAAGGTTATGTAGAGACCATTTTACATCGTCGTCGCTATATTCCGG
AAATCGTCAGCCGTAATTTTAATGTTCGAGGATTTGCTGAAAGAACCGCAATGAATACGCCAATTCAAGGTAGTGCCGCC
GATATAATCAAAAAAGCGATGATTCTTATGAGTGAACGCTTAGAATCTGAACAATTAGAAGCAAAATTATTGCTTCAAGT
GCACGATGAACTAATTTTTGAAGCACCTGAAGCTGAGATAGCTAAATTAGAAGAGATTGTACCAGATGTTATGGAAAATG
CAGTGGAACTTTCTGTACCACTTAAAGTGGATAGTGCATTCGGTGACACATGGTATGACGCGAAATAA

Protein sequence :
MNKLVLIDGNSIANRAFYALPLLNNDKGVYTNAVYGFAMMLMNVLEKEKPSHVLVAFDAGKTTFRHTTFKGYKGGRQKTP
SELSEQFPFIRELLTAYDIPQYELANYEADDIIGTLTKQAEADGLEVAIITGDRDLTQLASEKTTVYITKKGIADMETNT
PETLKEKYNLTPTQIIDMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKELAVLS
KELATINVNSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGGAPEEVKELKELSYEIVTELKEKHFGGKTALYV
ELENDNYHTANFIGLAIHSDQGTYFFTKETAENSVSFREWVESAQTKVVYDAKKTMVAMNRMGFAISGITFDIMLASYLL
NPSDSIDDFTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVAGHLARKAVAIAELEKRLVDDLEKNEQLALMEDLELPL
TFVLAQMEMQGVSVDTERLENMKVELAGRLKTLETSIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTGYSTAADVL
ESLSGKHDIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFV
PSKPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQEEVDSLMRRQAKAVNFGIVYGISDYGL
SQNLGITRKDAKDFIDRYFVSYPAVKEYMHDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAA
DIIKKAMILMSERLESEQLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVELSVPLKVDSAFGDTWYDAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
polA YP_281523.1 DNA polymerase I Not tested Not named Protein 0.0 50