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Name : Sfum_3360 (Sfum_3360) Accession : YP_847468.1 Strain : Syntrophobacter fumaroxidans MPOB Genome accession: NC_008554 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 4116263 - 4118191 bp Length : 1929 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: dde:Dde_0360 lipopolysaccharide biosynthesis prot DNA sequence : ATGATACAGCAATTGCGGAATCCGAAATTTTACTCAATGCTCATCATTGACGCATTTCTTTTCGCCGTGGCCTATTACGG AGCCTACCTGCTCCGCTTTGAATTCACTCTGCCTCCCAATCACCTGCCCCTCATCAATGCTCTCGTTCCTTGGGTCGTCG GCATGAAGCTGGGCGTTTTCTGCCTGTTCGGCCTCTACAGGGGGATGTGGCGGTTTTCGGGACTGGAGGATTTCTGGCGT CTGGGACAGGCGTCCGTTCTTTCCATGCTTCTGATTGTCGCTACGGTGGCTTACACTGACAACTTCACCGGATATCCCCG ATCCGTCTTTCTTCTGGACTGCGTTTTGACGTTTCTGCTGACCGGCGGTCTGCGTGTATGCATTCGGTCCTACTATATCG CCAGGAATACGCCGCGGGGGATCCGGGCATTCTCCCTGCCCAGGCTGAATTACGTTGAGAAAGAGCGCAAGCAGATTCTC ATCATCGGCGCCGGCGGGTCGGGAGAAAAGATGCTCCGCGAGATCTTCGACAATCCGCAGCTCCATTATCACGTGGTCGG GTTCCTGGACGACGATCCGGGCAAGCGGGGCCGCACGGTGCATGGGGTGCGGGTACTCGGGCCCGCGGACCATTTGTCCA GAGTCCTGGAGCAGAACAATATCGAACAGGTATTTATCTCGGTACCTTCCGCGACCGGAGCTCAGATGCGCCGGCTCATC GATATCTGCAAGGGATGCGGGATTTCCTACAAGACGCTTCCCGCCATCGGTTCGATCATGAACGGCAACGTGAGCATCAA GTCTCTGCGGGACGTCAATTACGAGGATTTGCTGCGCCGTCCTCCGGTCAGCCTGGAAACCGATGCCATCTCAGGCTACC TGACCAACCGCACGGTAATGGTGACGGGGGCGGGCGGGTCCATCGGCTCCGAACTCTGCCGCCAGGTCGCCCAGTTCAAG CCGCAGTTGCTGATCCTGGTCGATGCCAGCGAGTCCAACCTGTTCCATATGCAGATGGAATTGCAGCATGAGAGGGAATT TCGCAACTATCAGTGTATCTTGGGTCAGGTGCAGCAGCGTCTGCTGATGGAGAGCGTGTTCCGGAAGTACCGCCCGGACG TGGTGTTCCACGCCGCGGCTTACAAGCACGTCCCGATGCTGGAAAGGAATCCCTGGGAAGCCGTGTTCAACAACGTGCGC GGCAGCCAGGTAATGATGAAGCTGTCCAAGGATTACGGGGTGAAACGTTTCGTCCTGGTTTCCACCGACAAGGCGGTCCG GCCGACGAACGTGATGGGAACCAGCAAGCGCCTCACGGAGCTCATCCTGCAGTCCTTTCAGGGCAATGGGACAAAGTACA TGGCCGTGCGATTCGGCAATGTGGTCGGGTCCTCGGGTTCCGTCATTCCCCTCTTCCGCCGCCAGATCGAGCAGGGAGGC CCGGTCACCGTGACTCATCCCGAGGTCACCCGGTACTTCATGACGATTCCCGAAGCGGCTCAACTCATCCTGCAGGCCGG AGCGCTCGGGGAAGGCGGAGAAATCTTCATCCTGGAAATGGGAACCCCGGTAAAGATCGCGGACATGGCACAGGACCTGA TCCGGTTGTCGGGGAAGCAACCGGGCAGGGACATTGAAATCCAGTTCACCGGCCTGCGAGAGGGCGAGAAGCTTTACGAA GAGCTGATCACCCTCGATGAAGGCATCGTAAACACCAGGCACGAAAAGATCCTGGTGCTGCGCCCCAACGGAAATGGAAA CGGCAACGGCCATCATGCGGGAAACCACGATGCTTTTCGGCAGTGGCTGGATCGGGAATTGGAAGAGCTTTGCGCCATTG CGCGCAAGCATGACTCATACGCCATCAAGCGCAAGCTCAAGCAACTGGTTCCGGAATACACCCCCCAGGATGCGGAGTGC GTCCTGTAA Protein sequence : MIQQLRNPKFYSMLIIDAFLFAVAYYGAYLLRFEFTLPPNHLPLINALVPWVVGMKLGVFCLFGLYRGMWRFSGLEDFWR LGQASVLSMLLIVATVAYTDNFTGYPRSVFLLDCVLTFLLTGGLRVCIRSYYIARNTPRGIRAFSLPRLNYVEKERKQIL IIGAGGSGEKMLREIFDNPQLHYHVVGFLDDDPGKRGRTVHGVRVLGPADHLSRVLEQNNIEQVFISVPSATGAQMRRLI DICKGCGISYKTLPAIGSIMNGNVSIKSLRDVNYEDLLRRPPVSLETDAISGYLTNRTVMVTGAGGSIGSELCRQVAQFK PQLLILVDASESNLFHMQMELQHEREFRNYQCILGQVQQRLLMESVFRKYRPDVVFHAAAYKHVPMLERNPWEAVFNNVR GSQVMMKLSKDYGVKRFVLVSTDKAVRPTNVMGTSKRLTELILQSFQGNGTKYMAVRFGNVVGSSGSVIPLFRRQIEQGG PVTVTHPEVTRYFMTIPEAAQLILQAGALGEGGEIFILEMGTPVKIADMAQDLIRLSGKQPGRDIEIQFTGLREGEKLYE ELITLDEGIVNTRHEKILVLRPNGNGNGNGHHAGNHDAFRQWLDRELEELCAIARKHDSYAIKRKLKQLVPEYTPQDAEC VL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 6e-78 | 42 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-78 | 41 |
