Gene Information

Name : Sfum_2832 (Sfum_2832)
Accession : YP_846945.1
Strain : Syntrophobacter fumaroxidans MPOB
Genome accession: NC_008554
Putative virulence/resistance : Unknown
Product : IstB ATP binding domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 3494180 - 3494959 bp
Length : 780 bp
Strand : -
Note : PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: chy:CHY_1116 ISChy4, transposition helper protein

DNA sequence :
ATGAGCAGCACGCAACTCGTTCGCATTCAGGAACGCCTCAAGCATCTCAAACTCTACCGGATCAACGAACAACTCGAGAG
TCGGCTGGAAGAAGCTTCCCGGGGCAACGTGAGTTACGGCGACTTTCTCGATCAACTCCTCGACGAGGAGGTTTCGGCCA
AGAAGGAGAAGAACATTTCCATGCGGACCTCGATGGCCCGGTTCCCCTTCGTCAAGACCCTGGAGAGCTTCGACTTCGCC
TTCCAACCCTCCATCGACAAGAAACGGATCAATGAACTGGCCGCCTGTCGTTTCATTGCCAACGGCGAAAACGTCATCCT
GCTGGGACCGCCGGGCGTGGGCAAAACTCACCTGGCCGTGGCCCTCGGGATCAAGGCGGTGACCGAGGGATACCGTACCC
ATTTCACCCAGGCGATGCCCCTGGTCGCCTCCCTGACCAAGGCCTATGCGGAAAACCGCATCGAGGAGCGGCTCAAATTC
TACTGCCAACCCAAACTGCTCATCATCGACGAAATCGGCTATATCCCCATTGACCGGCATGGAGCCCATCTGTTCTTTCA
GCTCATTTCTCGGCGCTATGAGCGCGGCGCGCTGATCGTCACCTCCAATCGCAGCTTCGGCCAGTGGAATGAAATCTTCG
GCGACACGGTGATCGCCACCGCCATCCTGGACCGCATCCTGCATCATTCCACAACGGTCAACATCAAAGGCAACTCGTAC
CGGCTCAAAGAAAAGGTCAAAGCCGGACTTCTTCAAAGCCCCGAACTGGAGCAAACGTGA

Protein sequence :
MSSTQLVRIQERLKHLKLYRINEQLESRLEEASRGNVSYGDFLDQLLDEEVSAKKEKNISMRTSMARFPFVKTLESFDFA
FQPSIDKKRINELAACRFIANGENVILLGPPGVGKTHLAVALGIKAVTEGYRTHFTQAMPLVASLTKAYAENRIEERLKF
YCQPKLLIIDEIGYIPIDRHGAHLFFQLISRRYERGALIVTSNRSFGQWNEIFGDTVIATAILDRILHHSTTVNIKGNSY
RLKEKVKAGLLQSPELEQT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 5e-40 49
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 9e-49 49
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 2e-49 49
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-49 49
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 2e-49 49
unnamed CAA21402.1 - Not tested HPI Protein 2e-49 49
api84 CAF28558.1 putative transposase Not tested YAPI Protein 2e-49 49
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-49 49
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 2e-49 49
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 2e-49 49
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 2e-49 49
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 2e-49 49
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 2e-49 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sfum_2832 YP_846945.1 IstB ATP binding domain-containing protein VFG1460 Protein 3e-40 49
Sfum_2832 YP_846945.1 IstB ATP binding domain-containing protein VFG1663 Protein 5e-49 49
Sfum_2832 YP_846945.1 IstB ATP binding domain-containing protein VFG1627 Protein 1e-49 49
Sfum_2832 YP_846945.1 IstB ATP binding domain-containing protein VFG1606 Protein 1e-49 49
Sfum_2832 YP_846945.1 IstB ATP binding domain-containing protein VFG1515 Protein 1e-49 49