Gene Information

Name : Sfum_2292 (Sfum_2292)
Accession : YP_846409.1
Strain : Syntrophobacter fumaroxidans MPOB
Genome accession: NC_008554
Putative virulence/resistance : Virulence
Product : two component sigma54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2816806 - 2818194 bp
Length : 1389 bp
Strand : -
Note : PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: noc:Noc_0785 two component transpcriptional regulato

DNA sequence : 
ATGGCGGGAGAAAAGATCCTTGTCGTGGATGATGATCGGGGGCTGCGTACCCTGATGAAGGCCCGCCTGGAAGGGGCCGG
GTACCGGGTGACGCTTGCGGAGCGGGGAGAGGAAGCTCTGACCGCCGCGCAGGAGGAGGTCTACAGCGCAGCCGTGCTGG
ATCTCAAAATGGAGGAGATGGACGGCATGGTGCTGCTGGAGAAGCTGCTCCTGGTTCAGCCCTACCTCCCCGTGATCATC
CTGACCGCCTACGGGACAATCGCCGGAGCCGTCGAAGCCACCAAAAAGGGGGCCTACGACTTCATGACCAAACCGTTCGA
AGCCAAGGATCTCCTGTATCGTCTGGAGAAAGCCCTGGAGGTGGGCAGCCTCAGAATGGAAGTGGAACGGCTGCGGACCC
TCGTGCGCGAACGCTACCATTTCGACAACATCATTGCGTCGAGCGAGAAGATGCAGCAGGTTCTGCTCCAGGTGTCGCAA
ATCGCCGCCACCGACTCGACGGTCTGTCTCTACGGGGAAAGCGGCACGGGCAAGGAGTTGATCGCAAAAGTGCTTCACCT
GACCAGCACTCGGTCCCGGGGGCCGTTCGTGGCGATCAATTGCGGAGCCATTCCCGAAGGCCTGCTGGAGAGCGAGTTGT
TCGGGCACACCAAGGGTGCTTTCACGGGTGCGGATCAGGCGAAGAAAGGGCTTCTGCAACAGGCTGAAAGGGGCACGCTC
TTCATGGACGAGATTGCGGAGCTCACTCCGGCACTGCAGGTCAAGCTATTGCGGGTGTTCCAGGACCATGAGTTCTATCC
CGTCGGAGGCGTCCAACCGGTCAAGGTGGATACGCGCCTTGTGGCCGCCACCAACCAGGACCTATGGAAAGCGATCCAGG
ACGGGAAATTCCGGGAAGATCTATATTACCGCATCCATGTCATTCCGGTTTATCTGCCGCCTCTTCGCGAACGCCCCGAA
GATATCCCGCTGCTGGCCCATCACTTCCTGCAACACTTCAACGGCACCATGAACAAGAACATCCCCGGCTTTTCTCCGGA
TGCCATGCACCGCCTGATGCTGCATCGATGGCCCGGGAACGTCCGCGAACTGGCCAACGTAGTGGAGAGGGCCGTCGTGC
TGGCCCGGGAGGGCAACATCTGCGCCGAGCACCTGCTCCTGGAGCGGGAGGCGGTTTCCGACTCGGGGACCGAACTTCCT
CCCCTGACGGCGGCACGGGACGAATTCGAACGGGCGTACCTGATCCAGGTCCTCCACAGCACGAAGGGCAACGTCTCGCG
CGCGGCGGCCAAGGCGGGTCGATACCGCGCCGAGTTCTACAAGCTGTTGCGCAAGTACGATCTGGACCCCGCCACCTTCA
AGGAAGAGGAACGCTCGTCCGGCGCGTAG

Protein sequence : 
MAGEKILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEMDGMVLLEKLLLVQPYLPVII
LTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKALEVGSLRMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQ
IAATDSTVCLYGESGTGKELIAKVLHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTL
FMDEIAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFREDLYYRIHVIPVYLPPLRERPE
DIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGNVRELANVVERAVVLAREGNICAEHLLLEREAVSDSGTELP
PLTAARDEFERAYLIQVLHSTKGNVSRAAAKAGRYRAEFYKLLRKYDLDPATFKEEERSSGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-60 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-60 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sfum_2292 YP_846409.1 two component sigma54 specific Fis family transcriptional regulator BAC0467 Protein 7e-81 43
Sfum_2292 YP_846409.1 two component sigma54 specific Fis family transcriptional regulator BAC0089 Protein 7e-80 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sfum_2292 YP_846409.1 two component sigma54 specific Fis family transcriptional regulator VFG1249 Protein 7e-62 42