|
Name : Sfum_1838 (Sfum_1838) Accession : YP_845958.1 Strain : Syntrophobacter fumaroxidans MPOB Genome accession: NC_008554 Putative virulence/resistance : Unknown Product : RNA-binding S1 domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 2243097 - 2245463 bp Length : 2367 bp Strand : + Note : PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: dde:Dde_2316 RNA binding domain protein, S1 DNA sequence : GTGAACGAACACCTCGTACGAGCCCGGGCTGAAATCGAATCCGGCGAAGAATCCGGAACCACCTGGAAGGAAAACATGAA CGAACAGCACATCCTCCTGATCGCCGGCGAGCTTGGTCTCCCGGAACATCGGATCCGTGCCGCAGTCGAGCTTCTGGGAG AAGGCGCGACGGTCCCATTCATCGCGCGCTACCGCAAGGAAGCCACCGGCTCCCTGGACGAAATGGAAATTGCGGCGATT CGCGACCGTCTCGCGCAACTCGACGCTCTGGACAAACGACGGGCGACCGTATTGAAATCGCTCGAAGAACAGGAAAAACT GACCGAGGAACTGCGAAAGGCGGTTCTCGAAGCCGGTTCCCTGAGCGCACTGGAAGACTTGTACCTGCCCTTCCGGCCCA AACGCCGTACCAGGGCCACGGTGGCCCGGGAGAGAGGACTGGAACCCCTTGCCGACCTCATTTTCGCCCAGAACGACTCC ACAGACCCGGTCGCCGAGGCAGAACGGTTCGTGGACCCGGACCGGCAAGTGGTTTGCGCTGACGACGCCCTGGCGGGGGC CCGGGATATCGTCGCTGAACGGATAAACGAGAATGCCGGCGCGCGCGCCCGGCTGCGTGAGTTGTTCGCGGGCAGGGGGA CAACCCGCGCCAGGGTGGTTCCCGGGAAGGAGGGCGAGGGCATCCGTTATCGTGACTACTACGACTGGGAGGAACCCGTG GCGGACGCTCCATCGCATCGGGTTCTGGCGGTACTTCGCGGCGAGAAGGAAGGTTTCCTGACGCTGCATATCGCTCCTTT GGAAACCGAAGCCCTGTCCATCCTCGAATCCCTGTTTGTGCGGGGCGACTCCCCCGCCTCGCGGCAGGTCGCGGCCGCGG CCGCCGACGGATACAAAAGGCTGCTGGCCCCCTCCCTCGAAACCGAGGCCAGACAATTGAGCAAGGAACGCGCCGACAGG GAGGCCATCCGGGTTTTCGCGGACAACCTTCGCCATCTCCTGATGGCGCCGCCGCTCGGGGCAAGGAACGTGCTCGCCGT CGACCCGGGCTTCCGTACCGGGTGCAAGGTGGTGTGTCTCGACCCGCAGGGGAAACTCATCCACCACGAGACGGTCTATC CGCATACCGGGGAGCGGGCATCGGCAAAGGCCGCCGAGCGGCTGCGGGACCTGGTCGCAGGTTTTGGCATCGAGGCCGTG GCAATTGGCAACGGCACCGCGGGCAGGGAAACCGAAGCCTTCGTGCGGGGCCTTGGCCTTCCGACCGCCGTTCAGATCAT CATGGTGGCCGAAAGCGGGGCCTCCGTCTATTCCGCTTCCGCCGTCGCCCGCGAGGAATTCCCGGACCAGGACGTGACGG TACGGGGTTCCGTTTCCATCGGCAGGCGGCTGACGGACCCGCTGGCCGAACTGGTCAAGATCGACCCGAAAGCCATCGGC GTCGGCCAGTACCAGCACGACGTCGATCAAAGCGAGCTGAAAAAGAGCCTGGACGATGTGGTGATGAGCTGCGTGAACGC GGTGGGAGTCGAGGTCAATACGGCGAGCCCGCAACTGCTGACCTATGTTTCCGGGCTGGGACCTCAATTGGCCCGAAGCG TGGTCGCGCACCGGGACCGAAACGGTCCGTTCCGTTCGCGCAACGAATTGAAAAAAGTCGCGCGGCTCGGCCCCAAGGCG TTCCAGCAGGCAGCCGGCTTCCTGCGGGTCCGCGGCTCCGAAAATCCTCTCGACGCCAGTGCCGTCCACCCGGAATCCTA TCACATCGTGGAAGCCATGGCGCGTGACCTGGGTTGTTCCGTGACCGACCTGATGCGCGACGCGGACCTGCGCAAACGGA TCGACCCGGCCCGGTACGTTACCGCTCACGTCGGCCTCCCGACCCTTCTGGATATCCTGTCCGAACTGGCCAAGCCGGGC CGCGACCCGCGCGCCACGTTCGAATCCTTTTCCTTCGCCCAGGGAATCGAAAAACCCGAAGACCTCCGGGCCGGCATGAA ACTGCCCGGCATCGTCACCAATGTCACCGCCTTCGGCGCCTTTGTCGACATCGGGGTTCACAGGGACGGCCTGGTTCACG TGAGCGAGCTTTCCGATTGCTTTGTGAAGGATCCGCGGCAGGTGGTCCGCGTTCAGCAGCGCGTCACCGTCACGGTCCTG GATGTGGACCTCGAAAGAGGCCGTATCTCCCTTTCCATGAAGGAAGGCCGCCCGCCCGGAGCCGAATCGAAAAAGACCAA GGCACGGGGGGACCGGCCCGTGAAGAATCACTCGCCGGAAGGCGCCGCGCATCATGGACCGACACCTCCACCCGCGAAGG GAGGCCGTTTCAACAATCCGTTCGAAAAGGCTTTCAAGAAAGCGTAA Protein sequence : MNEHLVRARAEIESGEESGTTWKENMNEQHILLIAGELGLPEHRIRAAVELLGEGATVPFIARYRKEATGSLDEMEIAAI RDRLAQLDALDKRRATVLKSLEEQEKLTEELRKAVLEAGSLSALEDLYLPFRPKRRTRATVARERGLEPLADLIFAQNDS TDPVAEAERFVDPDRQVVCADDALAGARDIVAERINENAGARARLRELFAGRGTTRARVVPGKEGEGIRYRDYYDWEEPV ADAPSHRVLAVLRGEKEGFLTLHIAPLETEALSILESLFVRGDSPASRQVAAAAADGYKRLLAPSLETEARQLSKERADR EAIRVFADNLRHLLMAPPLGARNVLAVDPGFRTGCKVVCLDPQGKLIHHETVYPHTGERASAKAAERLRDLVAGFGIEAV AIGNGTAGRETEAFVRGLGLPTAVQIIMVAESGASVYSASAVAREEFPDQDVTVRGSVSIGRRLTDPLAELVKIDPKAIG VGQYQHDVDQSELKKSLDDVVMSCVNAVGVEVNTASPQLLTYVSGLGPQLARSVVAHRDRNGPFRSRNELKKVARLGPKA FQQAAGFLRVRGSENPLDASAVHPESYHIVEAMARDLGCSVTDLMRDADLRKRIDPARYVTAHVGLPTLLDILSELAKPG RDPRATFESFSFAQGIEKPEDLRAGMKLPGIVTNVTAFGAFVDIGVHRDGLVHVSELSDCFVKDPRQVVRVQQRVTVTVL DVDLERGRISLSMKEGRPPGAESKKTKARGDRPVKNHSPEGAAHHGPTPPPAKGGRFNNPFEKAFKKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 2e-142 | 49 |
