Gene Information

Name : Sfum_1378 (Sfum_1378)
Accession : YP_845504.1
Strain : Syntrophobacter fumaroxidans MPOB
Genome accession: NC_008554
Putative virulence/resistance : Unknown
Product : riboflavin biosynthesis protein RibD
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG1985
EC number : 1.1.1.193
Position : 1714012 - 1715103 bp
Length : 1092 bp
Strand : +
Note : KEGG: gme:Gmet_1624 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein

DNA sequence :
ATGAAACGGGCGTTGCGCCTGGCGGCAAAAGGCGCCGGCCGCACGAGTCCCAACCCCATGGTCGGGGCGGTCGTGGTGCG
TGGAGAAACCACGGTCGCGGAAGGTTTCCATGAATTCGTCGGAGGACCCCATGCCGAAGTGAACGCACTGCGGCAGGCGG
GCGACAAAGCAAGAGGCGCAACCTTGTACGTGACGCTCGAGCCGTGCAATCATCAAGGCAGGACGCCGCCGTGCACGCGG
GCGGTTCTCGATTCCGGCGTCGCCACGGTCGTGATCGGCATGGAGGATCCCAACCCGGGAGTCCGGGGAGGCGGAGCTTC
CTTTCTCAGGTCTCACGGTCTGCGGGTCCACGCGGGCATTCTCGAAAAGGAATGCCGCGCGCTCAATCAGCCCTTCATCA
AGCATGTCACCACCGGCCTTCCCTACGTGACCCTCAAGGCCGCGGTCACCCTCGACGGAGCGATCGCCTCCTCCTCGGGC
GATTCCAAATGGATCAGCAACGAGCGGTCCAGAAAGTTCGCACACCACCTGCGCTGCATTTCCGACGGGGTCCTGATCGG
CATCGGGACGGCCCTCGCGGACGATCCCCTGCTTTCCGCAAGAATCAAGCGAAGACCCGCCTGCCGGCAGCCCGTGCGCA
TCGTCCTCGACTCCCGCTTGCGTTTGCCTCTGGAAAGCGCCCTGGTGCGCACCGCCGCGGAATTCCCCCTCATGGTGGTC
TGCGGACGGGATGCTCCGCCCACGAGGGAAAAGGCTCTCGTGGATGCGGGCGCCGAGGTGATGCGCCTGTCTTCCGGCAA
GGGAGGGATTCATCTCCCCGAACTGCTCAGGGCGCTCGGGTCGAAGGGACTCTGCAGCCTGCTGGTGGAGGGAGGCGCCA
CGGTGCTCGGCGCTTTTCTGGACAACGGCCTGGCGGATGATTTCCATTTTTTCTACGCCCCCAAGGTTCTGGGCGATCCG
GCGGGAACTCCCATGGTCCGCGGCAGGGGCCGCGAACGCATGGCGGACGCCGTGCCCGTATTCGACGTGCGTGTCAGGCG
TTTCGGAGAGGATGTCATGCTATCCGGAAGACTGACCGAACACCTTTACTGA

Protein sequence :
MKRALRLAAKGAGRTSPNPMVGAVVVRGETTVAEGFHEFVGGPHAEVNALRQAGDKARGATLYVTLEPCNHQGRTPPCTR
AVLDSGVATVVIGMEDPNPGVRGGGASFLRSHGLRVHAGILEKECRALNQPFIKHVTTGLPYVTLKAAVTLDGAIASSSG
DSKWISNERSRKFAHHLRCISDGVLIGIGTALADDPLLSARIKRRPACRQPVRIVLDSRLRLPLESALVRTAAEFPLMVV
CGRDAPPTREKALVDAGAEVMRLSSGKGGIHLPELLRALGSKGLCSLLVEGGATVLGAFLDNGLADDFHFFYAPKVLGDP
AGTPMVRGRGRERMADAVPVFDVRVRRFGEDVMLSGRLTEHLY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 3e-44 43
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 3e-44 43