Gene Information

Name : Sfum_1004 (Sfum_1004)
Accession : YP_845133.1
Strain : Syntrophobacter fumaroxidans MPOB
Genome accession: NC_008554
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1232520 - 1233224 bp
Length : 705 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0848 ABC transporter related

DNA sequence : 
GTGAAAGAAAAGGCCGAACGCCCGGATATCTTCGCCGAAGGGCTCACGCGTATCTACCGTCTCGGAATGGGCGAGGTGAT
CGGAATTCGCGGCATCGATCTCGAAATCCCGAAGGGTGAACTGGTTGTGCTCAAGGGCGACAGCGGCTCAGGCAAGAGCA
CCCTGCTCGCCTTGCTTGCGGGCCTGGACCAGCCCACCGGAGGCCGCCTGTCCGTTGCGGGCCACGATCTGAGCTCGGCC
TCCCAGGCGCAGCTCACGGCATTCCGCAGGCAAGTCGTCGGCATGGTCTTCCAGTCCTTCAACCTTCTCCCCACGCTCAC
CGTCATCGAGAACGTCTGTCTCCCGGCCTTGTTGGCCGGCAAACCCCACGCCCGCACGCGTTCCGAAGCCGAAGAGCTGC
TGAGCTGGCTGGGAATGGCATCGCGGCATGCGCACCGTCCCTCACAACTGTCGGGCGGGGAGATGCAAAGAACGGCCATC
GCTCGAGCGCTGATCAACAGTCCCGAGATCATCCTCGCGGACGAGCCGACGGGAAACCTGGACAGCAACAACGGCGAAAT
CGTCATGCAACTGCTGGCCGAGCTCAATCGCCGTTTTCGCCGCACCGTTATCGTGGCGACCCACAGCACGCTCGCCGACC
CTTTTGCCACTGTCTTACTGCGGCTCAAAGACGGCGCCGTCACCGAGACGTCATGGATCAAGTAG

Protein sequence : 
MKEKAERPDIFAEGLTRIYRLGMGEVIGIRGIDLEIPKGELVVLKGDSGSGKSTLLALLAGLDQPTGGRLSVAGHDLSSA
SQAQLTAFRRQVVGMVFQSFNLLPTLTVIENVCLPALLAGKPHARTRSEAEELLSWLGMASRHAHRPSQLSGGEMQRTAI
ARALINSPEIILADEPTGNLDSNNGEIVMQLLAELNRRFRRTVIVATHSTLADPFATVLLRLKDGAVTETSWIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-30 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-30 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-30 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sfum_1004 YP_845133.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-39 44
Sfum_1004 YP_845133.1 ABC transporter-like protein NC_008702.1.4606598. Protein 5e-32 44
Sfum_1004 YP_845133.1 ABC transporter-like protein CP001581.1.gene798.p Protein 3e-41 43
Sfum_1004 YP_845133.1 ABC transporter-like protein CP001581.1.gene598.p Protein 6e-36 41