Gene Information

Name : Mthe_0136 (Mthe_0136)
Accession : YP_842576.1
Strain : Methanosaeta thermophila PT
Genome accession: NC_008553
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 126609 - 127541 bp
Length : 933 bp
Strand : +
Note : PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: chy:CHY_1057 hypothetical protein

DNA sequence : 
TTGAGGAACAAGAAAATAGCGGTAACCGGCGGTGCAGGATTCATAGGATCGAACATCGTCCGGGCTCTATGTGATGAGAA
TGATGTCACTGTCATCGATAATATGAGCACAGGACGGCGCGAGAACCTGCGCGGTTTGGAGGGGCGCATCAGGTTTGTGG
AATGTGATATAAATGATATCAAGATGCTGAAAAGAGAGTTCGAGTCTGTGGACTACGTGCTCCATCAGGCCGCCCTTCCA
TCGGTTCAGCGATCGATAATGGATCCCATGGCGACAAACAGGAGCAACATCGATGGGACGCTCTCTGTGCTCGTTGCGGC
AATGGATTGTGGTGTGAAAAGAGTTGTGTTCGCATCATCCTCTGCCGTTTACGGAGATTCTCCGGAGCTCCCGAAGAGGG
AGAGTCTGATTCCGAGGCCGATGAGCCCTTATGCTGTGACGAAGCTGGTGGGCGAGCATTACTGCAGGGTATTCTATGAG
ATATACGGGATCGAGTGCGTCTCCCTGAGATACTTCAACGTCTTCGGCCCCGGCCAGGACCCGGCATCTGAATATGCCGC
CGTCATCCCGAAGTTCATTGATGCGGTTCTCTCAGGCAGCCAGCCTGTGGTCTATGGCGATGGCGAGCAGACGAGGGATT
TTGTATACGTTGATGATGTCGTGCGGGCGAACATCCTCGCATGCCTGTCTCCCGGGGCGCCAGGTCTTGCGATCAACATC
GGCACAGGATATGCCACAAGCCTGAACCGGTTGCTCGATGCAATAGGAAGAGTCCTGAAAAGGTATATCCACCCCATCTA
CACCGAACCGCGCCCTGGTGATGTGAGGGATTCTGTGGCCGACATCACCCTCGCCAGAGAGGTGCTTGGGTACGCGCCAG
AATATGGGCTTGAGGATGGGCTGAATGAGATGCTGAAGTGCCGGCCTGCATGA

Protein sequence : 
MRNKKIAVTGGAGFIGSNIVRALCDENDVTVIDNMSTGRRENLRGLEGRIRFVECDINDIKMLKREFESVDYVLHQAALP
SVQRSIMDPMATNRSNIDGTLSVLVAAMDCGVKRVVFASSSAVYGDSPELPKRESLIPRPMSPYAVTKLVGEHYCRVFYE
IYGIECVSLRYFNVFGPGQDPASEYAAVIPKFIDAVLSGSQPVVYGDGEQTRDFVYVDDVVRANILACLSPGAPGLAINI
GTGYATSLNRLLDAIGRVLKRYIHPIYTEPRPGDVRDSVADITLAREVLGYAPEYGLEDGLNEMLKCRPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 1e-44 43
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 1e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mthe_0136 YP_842576.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 6e-45 43