Gene Information

Name : Bcen2424_4855 (Bcen2424_4855)
Accession : YP_838482.1
Strain :
Genome accession: NC_008543
Putative virulence/resistance : Virulence
Product : HrpO family type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 1856261 - 1856539 bp
Length : 279 bp
Strand : -
Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ, family 3; KEGG: bcn:Bcen_3511 type III secretion protein HrpO

DNA sequence : 
ATGACGAGCTCGACGATCCTCGACCTGACGCGCCAGGCGCTGATGCTCGTGCTGCTGCTGTCGCTGCCGATCGTGCTGAT
CGCGACCGTCACGGGCCTCGTCGTCGCGATCCTGCAGGCCGTCACGCAGGTGCAGGACGCCAACATCGGCATCGCGGTGC
GGCTGATCGCCGTGATGGTCGCGCTCGTGCTGCTGTCCGGCTGGCTCGGCGGCGAAGTGCTGCGCTTCGCGCAGCAGGCG
CTGGAACGCATGTTCGTTTCTTCCACAGGAGTTCTTTGA

Protein sequence : 
MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMVALVLLSGWLGGEVLRFAQQA
LERMFVSSTGVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3e-06 49
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 4e-04 44
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 4e-04 44
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 4e-04 44
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-06 43
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 2e-04 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcen2424_4855 YP_838482.1 HrpO family type III secretion protein VFG0187 Protein 6e-05 51
Bcen2424_4855 YP_838482.1 HrpO family type III secretion protein VFG0395 Protein 6e-07 43